Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G211200.2 | Wheat | nucleus | 96.15 | 95.69 |
| TraesCS5A01G204900.1 | Wheat | nucleus | 90.14 | 91.69 |
| HORVU5Hr1G060730.3 | Barley | plastid | 81.73 | 79.25 |
| EER98873 | Sorghum | nucleus | 54.33 | 55.39 |
| Zm00001d020409_P002 | Maize | nucleus | 51.68 | 52.06 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 29.57 | 30.0 |
| Solyc03g118540.2.1 | Tomato | cytosol | 23.32 | 29.75 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 28.37 | 28.43 |
| TraesCS4B01G364700.1 | Wheat | nucleus | 24.04 | 28.25 |
| Solyc01g005440.2.1 | Tomato | cytosol | 20.43 | 27.51 |
| PGSC0003DMT400036790 | Potato | cytosol | 25.72 | 27.44 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 26.92 | 27.32 |
| KRH38274 | Soybean | cytosol | 20.67 | 26.96 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 24.76 | 26.82 |
| Bra007937.1-P | Field mustard | nucleus | 16.11 | 26.8 |
| Bra016193.1-P | Field mustard | nucleus | 15.38 | 25.7 |
| AT1G48500.1 | Thale cress | nucleus | 18.99 | 25.48 |
| PGSC0003DMT400081778 | Potato | cytosol | 20.67 | 25.44 |
| Zm00001d005726_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 32.93 | 25.42 |
| Solyc06g068930.1.1 | Tomato | nucleus | 14.9 | 25.2 |
| KRH60357 | Soybean | nucleus | 22.36 | 25.07 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 13.22 | 25.0 |
| PGSC0003DMT400074101 | Potato | nucleus | 15.14 | 24.9 |
| CDX95570 | Canola | plastid | 8.89 | 24.67 |
| Bra022254.1-P | Field mustard | nucleus | 19.47 | 24.18 |
| KRH41663 | Soybean | cytosol | 21.39 | 24.12 |
| Bra021281.1-P | Field mustard | nucleus | 19.95 | 23.51 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 22.12 | 23.23 |
| AT1G70700.3 | Thale cress | cytosol | 15.38 | 23.19 |
| AT3G17860.1 | Thale cress | nucleus | 19.23 | 22.73 |
| KRH39044 | Soybean | nucleus | 19.71 | 21.24 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G203400.2 | EnsemblPlantsGene:TraesCS5B01G203400 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF3 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg | SMART:SM00979 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:369635388..369637712
Molecular Weight (calculated)
43996.7 Da
IEP (calculated)
10.559
GRAVY (calculated)
-0.474
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDFLGAIG HEQLLQQQQR QRAAAAEDDA TRKESAYFGG GGVPPMDWSF AGRAGAAPAV MSFRSAAREE QQGELAYPKQ QASRVLTPQR SFGAETHGSV
101: QYAAAARAAY GVQPSQQQHA PNGARVIPMS SPFNPNNPMF RVQSSPNLPN GGAAGSPFKQ PPFAMNNAVA ASTVGVYKSR DMPKPKTAQL TIFYAGSVNV
201: FNNVSAEKAQ ELMFLASRGS LPTAPTTVTR SPDATFFTPA KLAAPEASPA KQMLAQIPQR VSPPLPAISK PMSIMSQAAC LPKSTSSSNT DSAVPKSSGQ
301: LVVPPTSQPS SSTHTATLSS TTAASIMPRA VPQARKASLA RFLEKRKERV TTTAPYPSAK SPMESTDTVG SANDNNSKSS SCTEIAFSSN HEESLRLGRP
401: RNISFSGESP STKLHI
101: QYAAAARAAY GVQPSQQQHA PNGARVIPMS SPFNPNNPMF RVQSSPNLPN GGAAGSPFKQ PPFAMNNAVA ASTVGVYKSR DMPKPKTAQL TIFYAGSVNV
201: FNNVSAEKAQ ELMFLASRGS LPTAPTTVTR SPDATFFTPA KLAAPEASPA KQMLAQIPQR VSPPLPAISK PMSIMSQAAC LPKSTSSSNT DSAVPKSSGQ
301: LVVPPTSQPS SSTHTATLSS TTAASIMPRA VPQARKASLA RFLEKRKERV TTTAPYPSAK SPMESTDTVG SANDNNSKSS SCTEIAFSSN HEESLRLGRP
401: RNISFSGESP STKLHI
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.