Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G159700.1 | Wheat | nucleus | 97.43 | 97.43 |
| TraesCS6B01G198100.1 | Wheat | extracellular, mitochondrion, nucleus, plastid | 97.43 | 95.99 |
| HORVU6Hr1G034720.1 | Barley | nucleus | 88.22 | 90.55 |
| Os02t0192100-01 | Rice | mitochondrion | 39.83 | 74.4 |
| EES06432 | Sorghum | mitochondrion | 67.67 | 63.33 |
| GSMUA_Achr1P19060_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 43.47 | 46.88 |
| VIT_14s0083g00450.t01 | Wine grape | mitochondrion | 43.04 | 46.42 |
| GSMUA_Achr1P15680_001 | Banana | endoplasmic reticulum, plasma membrane | 22.27 | 43.7 |
| CDY12623 | Canola | nucleus | 28.05 | 41.32 |
| Bra034018.1-P | Field mustard | nucleus | 26.77 | 40.85 |
| KRH01477 | Soybean | nucleus | 34.9 | 40.35 |
| Solyc02g065630.2.1 | Tomato | nucleus | 38.12 | 40.27 |
| CDX96108 | Canola | cytosol, mitochondrion, nucleus, plastid | 29.55 | 40.12 |
| Bra004207.1-P | Field mustard | nucleus | 29.55 | 40.12 |
| CDY01786 | Canola | cytosol | 29.76 | 39.94 |
| PGSC0003DMT400068308 | Potato | plastid | 38.54 | 39.82 |
| AT1G67170.1 | Thale cress | nucleus | 30.41 | 39.55 |
| CDY54119 | Canola | mitochondrion | 23.98 | 30.68 |
| TraesCS3A01G526000.1 | Wheat | nucleus | 15.42 | 26.97 |
| TraesCS3A01G524600.1 | Wheat | nucleus | 15.2 | 26.59 |
| TraesCS2A01G226300.1 | Wheat | nucleus | 19.06 | 25.72 |
| TraesCS1A01G232900.1 | Wheat | nucleus | 8.35 | 24.07 |
| TraesCS6A01G347500.1 | Wheat | mitochondrion | 21.84 | 22.52 |
| TraesCS5A01G473300.1 | Wheat | cytosol, mitochondrion, nucleus | 16.06 | 22.12 |
| TraesCS5A01G121400.1 | Wheat | nucleus | 14.78 | 21.23 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G169900.1 | EnsemblPlantsGene:TraesCS6A01G169900 | ncoils:Coil | PANTHER:PTHR33405 | PANTHER:PTHR33405:SF5 | SEG:seg |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:180305292..180308755
Molecular Weight (calculated)
49617.7 Da
IEP (calculated)
8.328
GRAVY (calculated)
-0.776
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKGRMPPP YHHRPLPGPG SGPPHGMMHR DPYGPGMHQQ PGPGPYPYDM LPPPEILEQK LAAQCGEIQK LALENERLAA SHASLRKELA AAQQELQRIQ
101: AQGEAAKVAE EQEMRGLLDK AAKMEADLKS YESVKADLQQ AHAEAQNLAA ARQHLLADAQ KLNKDLQRNF GEAQQLPVLK ADLDAARQEY QHLRAAYEYE
201: RKLKMDHSES LQGMKKNYDS MVTELEKLRA ELTNTTNIDR SGTLYNPNFA QKDGGTSSHH SAYDGGYGVA QARTPPGMPD PLSGSPAGTA PRSGYDPSRG
301: NSYETSRLAR VHDASRGATG YDSLKVAGYD TSRMPALGAQ AAAPTAHGSS AGYYGSSQVT PPSHARAPGA PTYGSAQVPP SYASGPVPSS SYGATTAQGL
401: PSYGQIQAPS YAHTQMPPSY GLAQASSHFA PTQGGSPYGL SAQPQGYGSA QAAPNIGGAY QAPHGRR
101: AQGEAAKVAE EQEMRGLLDK AAKMEADLKS YESVKADLQQ AHAEAQNLAA ARQHLLADAQ KLNKDLQRNF GEAQQLPVLK ADLDAARQEY QHLRAAYEYE
201: RKLKMDHSES LQGMKKNYDS MVTELEKLRA ELTNTTNIDR SGTLYNPNFA QKDGGTSSHH SAYDGGYGVA QARTPPGMPD PLSGSPAGTA PRSGYDPSRG
301: NSYETSRLAR VHDASRGATG YDSLKVAGYD TSRMPALGAQ AAAPTAHGSS AGYYGSSQVT PPSHARAPGA PTYGSAQVPP SYASGPVPSS SYGATTAQGL
401: PSYGQIQAPS YAHTQMPPSY GLAQASSHFA PTQGGSPYGL SAQPQGYGSA QAAPNIGGAY QAPHGRR
001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR
Arabidopsis Description
FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.