Factsheet for TraesCS5B01G135100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09228	Sorghum	cytosol	74.92	74.67
Zm00001d052458_P001	Maize	extracellular	72.61	74.32
GSMUA_AchrUn_...	Banana	cytosol	43.89	74.3
Os12t0137100-01	Rice	cytosol, nucleus, plastid	68.65	71.23
KRH33201	Soybean	endoplasmic reticulum	65.68	70.07
TraesCS5D01G142800.1	Wheat	nucleus	76.57	69.88
TraesCS5A01G136100.1	Wheat	nucleus	76.57	69.67
Os11t0140600-01	Rice	cytosol	69.97	68.83
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	63.37	68.82
Solyc04g016400.2.1	Tomato	cytosol	54.79	68.59
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	61.06	67.03
TraesCS4B01G132800.1	Wheat	nucleus	71.95	66.46
PGSC0003DMT400033117	Potato	cytosol	55.78	65.76
CDY56710	Canola	cytosol, extracellular, plastid	61.06	65.37
HORVU5Hr1G043650.2	Barley	plastid	79.54	62.6
Solyc10g079890.1.1	Tomato	plastid	68.98	61.47
Bra034103.1-P	Field mustard	cytosol	64.36	61.13
CDY41334	Canola	cytosol	64.36	60.94
PGSC0003DMT400076703	Potato	cytosol, plastid	68.65	60.47
CDY67472	Canola	cytosol	58.09	58.67
AT5G04170.1	Thale cress	cytosol	61.72	52.82
Bra009480.1-P	Field mustard	cytosol	61.06	50.68
CDX70254	Canola	cytosol	60.07	49.86
CDX80907	Canola	cytosol	61.39	46.04
CDY41394	Canola	mitochondrion	60.4	45.3
KRH72037	Soybean	cytosol, plasma membrane, plastid	37.95	44.4
AT3G10300.6	Thale cress	cytosol	54.13	43.5
Bra005797.1-P	Field mustard	cytosol	58.42	43.07
TraesCS7B01G035100.1	Wheat	cytosol	36.96	41.33

Protein Annotations

EnsemblPlants:TraesCS5B01G135100.1	EnsemblPlantsGene:TraesCS5B01G135100	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10183	PANTHER:PTHR10183:SF372
PFAM:PF13202	PFAM:PF13405	PFscan:PS50222	ScanProsite:PS00018	SEG:seg	SMART:SM00054
SUPFAM:SSF47473	TIGR:cd16180	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5B:+:254569747..254572997

Molecular Weight (calculated)

31393.5 Da

IEP (calculated)

5.334

GRAVY (calculated)

-0.344

Length

303 amino acids

Sequence
(BLAST)

001: MSGYPYGGAG GGGGGGYGAP PPYGSSPAPS APPYGDKPPK EGKASSPYYA SPPSSQPQSY GGGGYGAPPA GQPQSYGGGG GYGAPPAGQS YGAPPPSSAP
101: YGAPPPAAAP YGAAGGYGSP FAALVPSAFP PGTDPNVVAC FQAADRDGSG TIDDKELQSA LSGYNQSFSL RTVHLLMYLF TNTNVRRIGP KEFTSVFYSL
201: QNWRSIFERF DRDRSGKIDA SELRDALLSL GYSVSPTVLD LLVSKFDKTG GMSKAVEYDN FIECCLTVKG LTEKFKEKDT SYSGSATFSY EAFMLTVLPF
301: IIA

Best Arabidopsis Sequence Match ( AT3G10300.3 )
(BLAST)

001: MSGYPPSSQG YGYGGNPPPP QPPYGSTGNN PPPYGSSGSN PPPPYGSSAS SPYAVPYGAQ PAPYGAPPSA PYASLPGDHN KPHKEKPHGA SYGSPSPGGY
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KGLTEKFKEK DTALSGSAIF NYENFMLTVL PFLVA

Arabidopsis Description

Calcium-binding EF-hand family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.