Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES09228 | Sorghum | cytosol | 86.82 | 84.54 |
| GSMUA_AchrUn_... | Banana | cytosol | 46.62 | 77.09 |
| TraesCS5B01G135100.1 | Wheat | cytosol, nucleus, plastid | 74.32 | 72.61 |
| Os12t0137100-01 | Rice | cytosol, nucleus, plastid | 71.62 | 72.6 |
| Os11t0140600-01 | Rice | cytosol | 73.65 | 70.78 |
| Solyc04g016400.2.1 | Tomato | cytosol | 56.76 | 69.42 |
| GSMUA_Achr8P17120_001 | Banana | cytosol, plasma membrane, plastid | 65.2 | 69.18 |
| TraesCS4D01G127600.1 | Wheat | cytosol | 75.34 | 69.04 |
| TraesCS4B01G132800.1 | Wheat | nucleus | 76.35 | 68.9 |
| TraesCS4A01G186100.1 | Wheat | golgi | 75.0 | 68.31 |
| PGSC0003DMT400033117 | Potato | cytosol | 58.78 | 67.7 |
| VIT_00s0252g00130.t01 | Wine grape | cytosol, plasma membrane, plastid | 62.16 | 66.67 |
| KRH33201 | Soybean | endoplasmic reticulum | 63.18 | 65.85 |
| HORVU4Hr1G026030.9 | Barley | cytosol | 71.96 | 65.14 |
| CDY56710 | Canola | cytosol, extracellular, plastid | 62.16 | 65.02 |
| CDY41334 | Canola | cytosol | 66.89 | 61.88 |
| Bra034103.1-P | Field mustard | cytosol | 66.55 | 61.76 |
| Solyc10g079890.1.1 | Tomato | plastid | 70.27 | 61.18 |
| TraesCS5D01G142800.1 | Wheat | nucleus | 67.91 | 60.54 |
| PGSC0003DMT400076703 | Potato | cytosol, plastid | 70.27 | 60.47 |
| TraesCS5A01G136100.1 | Wheat | nucleus | 67.91 | 60.36 |
| HORVU5Hr1G043650.2 | Barley | plastid | 78.38 | 60.26 |
| CDY67472 | Canola | cytosol | 58.78 | 58.0 |
| AT5G04170.1 | Thale cress | cytosol | 64.53 | 53.95 |
| Bra009480.1-P | Field mustard | cytosol | 65.88 | 53.42 |
| CDX70254 | Canola | cytosol | 63.85 | 51.78 |
| CDX80907 | Canola | cytosol | 64.53 | 47.28 |
| CDY41394 | Canola | mitochondrion | 63.51 | 46.53 |
| Bra005797.1-P | Field mustard | cytosol | 60.14 | 43.31 |
| KRH72037 | Soybean | cytosol, plasma membrane, plastid | 37.5 | 42.86 |
| AT3G10300.6 | Thale cress | cytosol | 54.39 | 42.71 |
| Zm00001d049940_P002 | Maize | cytosol | 36.49 | 42.02 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | ProteinID:AQK57284.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | InterPro:IPR002048 | UniProt:K7V294 | PFAM:PF13202 |
| PFAM:PF13405 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR10183 | PANTHER:PTHR10183:SF372 | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI00022187A3 | EnsemblPlantsGene:Zm00001d052458 | EnsemblPlants:Zm00001d052458_P001 | EnsemblPlants:Zm00001d052458_T001 | SEG:seg |
Description
Probable calcium-binding protein CML50
Coordinates
chr4:-:190412358..190415523
Molecular Weight (calculated)
31121.5 Da
IEP (calculated)
5.989
GRAVY (calculated)
-0.396
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGYPPPGSG YPYGPGGGYG APPPPYGSSP APSAPPYGEK PPKEGKTSTS SAPPYYGAPP PSYGAPPPSQ PYGGGGGGGG GYGYGASQPP PYGGAPQQQP
101: PYGGGAPAGF GSPFASLVPS AFPPGTDPNV VACFQAADRD GSGMIDDKEL QSALSGYNQS FSLRTVHLLM YLFTNTNVRK IGPKEFTSVF YSLQNWRAIF
201: ERFDRDRSGR IDMSELRDAL LSLGYSVSPT VLDLLVSKFD KTGGKSKAIE YDNFIECCLT VKGLTEKFKE KDTAYSGSAT FTYEAFMLTV LPFLIA
101: PYGGGAPAGF GSPFASLVPS AFPPGTDPNV VACFQAADRD GSGMIDDKEL QSALSGYNQS FSLRTVHLLM YLFTNTNVRK IGPKEFTSVF YSLQNWRAIF
201: ERFDRDRSGR IDMSELRDAL LSLGYSVSPT VLDLLVSKFD KTGGKSKAIE YDNFIECCLT VKGLTEKFKE KDTAYSGSAT FTYEAFMLTV LPFLIA
001: MSGYPPSSQG YGYGGNPPPP QPPYGSTGNN PPPYGSSGSN PPPPYGSSAS SPYAVPYGAQ PAPYGAPPSA PYASLPGDHN KPHKEKPHGA SYGSPSPGGY
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KGLTEKFKEK DTALSGSAIF NYENFMLTVL PFLVA
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KGLTEKFKEK DTALSGSAIF NYENFMLTVL PFLVA
Arabidopsis Description
Calcium-binding EF-hand family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.