CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034103.1-P	Field mustard	cytosol	99.38	99.69
CDY56710	Canola	cytosol, extracellular, plastid	88.12	99.65
GSMUA_AchrUn_...	Banana	cytosol	41.88	74.86
Solyc04g016400.2.1	Tomato	cytosol	51.88	68.59
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	58.75	68.12
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	59.06	67.74
EES09228	Sorghum	cytosol	64.06	67.43
Os12t0137100-01	Rice	cytosol, nucleus, plastid	61.25	67.12
Zm00001d052458_P001	Maize	extracellular	61.88	66.89
Os11t0140600-01	Rice	cytosol	62.81	65.26
PGSC0003DMT400033117	Potato	cytosol	52.19	64.98
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	60.94	64.36
TraesCS4D01G127600.1	Wheat	cytosol	60.94	60.37
TraesCS4B01G132800.1	Wheat	nucleus	61.56	60.06
CDY67472	Canola	cytosol	56.25	60.0
TraesCS4A01G186100.1	Wheat	golgi	60.94	60.0
Solyc10g079890.1.1	Tomato	plastid	61.88	58.24
PGSC0003DMT400076703	Potato	cytosol, plastid	61.88	57.56
TraesCS5D01G142800.1	Wheat	nucleus	59.69	57.53
TraesCS5A01G136100.1	Wheat	nucleus	59.69	57.36
AT3G10300.6	Thale cress	cytosol	66.56	56.5
CDX70254	Canola	cytosol	63.12	55.34
CDX80907	Canola	cytosol	67.19	53.22
HORVU5Hr1G043650.2	Barley	plastid	62.19	51.69
CDY41394	Canola	mitochondrion	62.81	49.75
HORVU4Hr1G026030.9	Barley	cytosol	50.31	49.24
KRH72037	Soybean	cytosol, plasma membrane, plastid	36.25	44.79
CDX83268	Canola	cytosol	25.62	36.77
CDY31179	Canola	cytosol	25.62	36.77

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	GO:A0A078HVE9	UniProt:A0A078HVE9	EnsemblPlants:CDY41334	ProteinID:CDY41334
ProteinID:CDY41334.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	EnsemblPlantsGene:GSBRNA2T00072889001	InterPro:IPR002048	PFAM:PF13202	PFAM:PF13405	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR10183	PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EE033C
SEG:seg	:	:	:	:	:

Description

BnaA01g31850DBnaA01g31850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVE9]

Coordinates

chrLK032495:+:164632..166299

Molecular Weight (calculated)

33769.2 Da

IEP (calculated)

6.928

GRAVY (calculated)

-0.508

Length

320 amino acids

Sequence
(BLAST)

001: MSGYPPSSQG YGYGGNPPPP QQPYGSSGAN PPPPQPYGSS GGNPPPYGSS AASPYAVPYG SQPPPSSAPY GAPPSAPYAS PPGDHKPHKE KPQAAYGSPG
101: GYGSSGGYGG YGAPPSGHGG GYGAPPPPPQ QAGYGSPFAS LVPSAFPPGT DPNIVTCFQA ADRDQSGFID DKELQGALSS YNQSFSMRTV HLLMYLFTNS
201: NVRKIGPKEF TSLFYSLQSW RTIFERFDKD RSGKIDTNEL RDALLSLGFS VSPVVLDLLV SKFDKSGGRN RAIEYDNFIE CCLTVKGLTE KFKEKDTALS
301: GSATFNYEAF MLTVLPFLVA

Best Arabidopsis Sequence Match ( AT3G10300.3 )
(BLAST)

001: MSGYPPSSQG YGYGGNPPPP QPPYGSTGNN PPPYGSSGSN PPPPYGSSAS SPYAVPYGAQ PAPYGAPPSA PYASLPGDHN KPHKEKPHGA SYGSPSPGGY
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KGLTEKFKEK DTALSGSAIF NYENFMLTVL PFLVA

Arabidopsis Description

Calcium-binding EF-hand family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.