Factsheet for AT3G10300.6

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56710	Canola	cytosol, extracellular, plastid	53.58	71.38
Bra034103.1-P	Field mustard	cytosol	56.76	67.08
CDY41334	Canola	cytosol	56.5	66.56
GSMUA_AchrUn_...	Banana	cytosol	29.44	62.01
Solyc04g016400.2.1	Tomato	cytosol	38.73	60.33
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	43.24	59.06
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	42.97	58.06
Os12t0137100-01	Rice	cytosol, nucleus, plastid	44.56	57.53
EES09228	Sorghum	cytosol	45.89	56.91
PGSC0003DMT400033117	Potato	cytosol	38.46	56.42
Os11t0140600-01	Rice	cytosol	45.89	56.17
AT5G04170.1	Thale cress	cytosol	51.99	55.37
Zm00001d052458_P001	Maize	extracellular	42.71	54.39
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	43.5	54.13
TraesCS5D01G142800.1	Wheat	nucleus	45.36	51.51
TraesCS4D01G127600.1	Wheat	cytosol	43.77	51.08
TraesCS5A01G136100.1	Wheat	nucleus	45.09	51.05
TraesCS4B01G132800.1	Wheat	nucleus	44.3	50.91
TraesCS4A01G186100.1	Wheat	golgi	43.5	50.46
Solyc10g079890.1.1	Tomato	plastid	44.83	49.71
PGSC0003DMT400076703	Potato	cytosol, plastid	44.83	49.13
HORVU4Hr1G026030.9	Barley	cytosol	40.58	46.79
HORVU5Hr1G043650.2	Barley	plastid	43.24	42.34
KRH72037	Soybean	cytosol, plasma membrane, plastid	22.81	33.2
AT2G27480.1	Thale cress	cytosol, nucleus, peroxisome	19.36	32.02

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EntrezGene:820192	UniProt:A0A1I9LRS6	ProteinID:ANM65284.1	ArrayExpress:AT3G10300
EnsemblPlantsGene:AT3G10300	RefSeq:AT3G10300	TAIR:AT3G10300	RefSeq:AT3G10300-TAIR-G	EnsemblPlants:AT3G10300.6	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048
RefSeq:NP_001327262.1	PFAM:PF13202	PFAM:PF13405	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10183
PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0008495A4A	SEG:seg	:

Description

Calcium-binding EF-hand family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRS6]

Coordinates

chr3:+:3186038..3188205

Molecular Weight (calculated)

40691.3 Da

IEP (calculated)

9.296

GRAVY (calculated)

-0.567

Length

377 amino acids

Sequence
(BLAST)

001: MSGYPPSSQG YGYGGNPPPP QPPYGSTGNN PPPYGSSGSN PPPPYGSSAS SPYAVPYGAQ PAPYGAPPSA PYASLPGDHN KPHKEKPHGA SYGSPSPGGY
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KVCYFHGLGR HILMQFYHLN YSRLFLYNVS NVCYVLIKNN RRGSPRSSRR RIRRYQAQLF SITRTSCSLF YHSSSLE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.