Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000510.1-P | Field mustard | cytosol | 72.37 | 73.99 |
| CDY31179 | Canola | cytosol | 72.37 | 73.99 |
| CDX83268 | Canola | cytosol | 71.05 | 72.65 |
| KRH22671 | Soybean | cytosol, plastid | 49.12 | 51.38 |
| KRH26648 | Soybean | cytosol, plastid | 47.37 | 50.7 |
| VIT_06s0080g00450.t01 | Wine grape | plastid | 46.93 | 47.56 |
| GSMUA_Achr3P22660_001 | Banana | plastid | 46.49 | 44.92 |
| Solyc11g068460.1.1 | Tomato | cytosol, plastid | 45.61 | 41.77 |
| Os08t0558100-01 | Rice | cytosol | 45.18 | 40.71 |
| TraesCS7A01G134000.1 | Wheat | cytosol | 45.18 | 40.08 |
| Zm00001d049940_P002 | Maize | cytosol | 43.42 | 38.52 |
| TraesCS7D01G133400.1 | Wheat | cytosol | 42.98 | 37.84 |
| EES14088 | Sorghum | cytosol | 44.74 | 37.78 |
| TraesCS7B01G035100.1 | Wheat | cytosol | 42.54 | 35.79 |
| HORVU7Hr1G027810.6 | Barley | cytosol | 41.67 | 35.06 |
| PGSC0003DMT400067730 | Potato | cytosol, plastid | 37.72 | 29.66 |
| AT5G04170.1 | Thale cress | cytosol | 36.84 | 23.73 |
| AT3G10300.6 | Thale cress | cytosol | 32.02 | 19.36 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | EntrezGene:817293 | ProteinID:AAD15600.1 | ProteinID:AEC08001.1 | EMBL:AK229120 |
| ArrayExpress:AT2G27480 | EnsemblPlantsGene:AT2G27480 | RefSeq:AT2G27480 | TAIR:AT2G27480 | RefSeq:AT2G27480-TAIR-G | EnsemblPlants:AT2G27480.1 |
| TAIR:AT2G27480.1 | EMBL:BT030078 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | GO:GO:0008150 | GO:GO:0046872 | InterPro:IPR002048 | RefSeq:NP_180317.3 |
| PO:PO:0000293 | PO:PO:0009047 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR10183 | PANTHER:PTHR10183:SF372 |
| UniProt:Q9ZQH1 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI0001739189 | : | : |
Description
CML48Probable calcium-binding protein CML48 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQH1]
Coordinates
chr2:+:11746683..11748051
Molecular Weight (calculated)
26131.7 Da
IEP (calculated)
4.674
GRAVY (calculated)
-0.352
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYSNAYAPS APELPESFVQ QQHDGESRYT YAYPSYQPTQ QFSSYSGMFS PETHPEIVRS FESADRNRSG FLEESELRQA LSLSGYDGIS NRTIRLLLFI
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.