CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91072
KRH35700

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27480.1	KRG91072	AT1G49840.1	21798944
AT2G27480.1	KRH35700	AT1G49840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22671	Soybean	cytosol, plastid	87.79	85.78
VIT_06s0080g00450.t01	Wine grape	plastid	67.61	64.0
Solyc11g068460.1.1	Tomato	cytosol, plastid	64.32	55.02
GSMUA_Achr3P22660_001	Banana	plastid	59.15	53.39
CDY31179	Canola	cytosol	53.52	51.12
CDX83268	Canola	cytosol	52.58	50.22
Bra000510.1-P	Field mustard	cytosol	52.11	49.78
Os08t0558100-01	Rice	cytosol	56.34	47.43
AT2G27480.1	Thale cress	cytosol, nucleus, peroxisome	50.7	47.37
Zm00001d049940_P002	Maize	cytosol	55.4	45.91
TraesCS7A01G134000.1	Wheat	cytosol	53.99	44.75
TraesCS7D01G133400.1	Wheat	cytosol	52.58	43.24
EES14088	Sorghum	cytosol	53.99	42.59
TraesCS7B01G035100.1	Wheat	cytosol	53.05	41.7
PGSC0003DMT400067730	Potato	cytosol, plastid	55.4	40.69
HORVU7Hr1G027810.6	Barley	cytosol	51.64	40.59
KRH33201	Soybean	endoplasmic reticulum	48.36	36.27
KRH72037	Soybean	cytosol, plasma membrane, plastid	35.68	29.34

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100499969	MapMan:35.1	EMBL:ACUP02007729	EMBL:BT090325	UniProt:C6SYS7
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_12G185400	GO:GO:0003674	GO:GO:0003824
GO:GO:0004198	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538
InterPro:IPR002048	EnsemblPlants:KRH26648	ProteinID:KRH26648	ProteinID:KRH26648.1	PFAM:PF13405	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR10183	PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0001B1596E
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:34646460..34649191

Molecular Weight (calculated)

24083.5 Da

IEP (calculated)

7.211

GRAVY (calculated)

-0.329

Length

213 amino acids

Sequence
(BLAST)

001: MSSSYHFQSQ SYAPSAPEQP PYSNYHHTSS SASSSFPPGT PHDVIRSFQM VDRDRSGFID ERELQQALSS GFHHFNLRTI RFLMFLFKSP NLPLTIGPKE
101: FAALWSCLGH WRGIFERYDK DRSGKIDPLE LRDALYGIGY AVPGSVLQLL LSKYGDGSGR RVELGFDSFV ECGMIIKGLT DKFKEKDTRY TGSATLSYDA
201: FMTMVLPFLV SYD

Best Arabidopsis Sequence Match ( AT2G27480.1 )
(BLAST)

001: MSYSNAYAPS APELPESFVQ QQHDGESRYT YAYPSYQPTQ QFSSYSGMFS PETHPEIVRS FESADRNRSG FLEESELRQA LSLSGYDGIS NRTIRLLLFI
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD

Arabidopsis Description

CML48Probable calcium-binding protein CML48 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQH1]
SUBAcon: [cytosol,nucleus,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.