CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 3
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91072
KRH35700

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27480.1	KRG91072	AT1G49840.1	21798944
AT2G27480.1	KRH35700	AT1G49840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26648	Soybean	cytosol, plastid	85.78	87.79
VIT_06s0080g00450.t01	Wine grape	plastid	66.06	64.0
Solyc11g068460.1.1	Tomato	cytosol, plastid	64.22	56.22
GSMUA_Achr3P22660_001	Banana	plastid	58.26	53.81
Os08t0558100-01	Rice	cytosol	60.09	51.78
CDY31179	Canola	cytosol	51.38	50.22
CDX83268	Canola	cytosol	50.92	49.78
Bra000510.1-P	Field mustard	cytosol	50.46	49.33
AT2G27480.1	Thale cress	cytosol, nucleus, peroxisome	51.38	49.12
TraesCS7A01G134000.1	Wheat	cytosol	54.59	46.3
Zm00001d049940_P002	Maize	cytosol	54.13	45.91
TraesCS7D01G133400.1	Wheat	cytosol	51.38	43.24
EES14088	Sorghum	cytosol	53.21	42.96
TraesCS7B01G035100.1	Wheat	cytosol	51.83	41.7
HORVU7Hr1G027810.6	Barley	cytosol	51.38	41.33
PGSC0003DMT400067730	Potato	cytosol, plastid	54.59	41.03
KRH33201	Soybean	endoplasmic reticulum	46.33	35.56
KRH72037	Soybean	cytosol, plasma membrane, plastid	34.4	28.96

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EMBL:ACUP02008425	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
EnsemblPlantsGene:GLYMA_13G316100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004198	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	UniProt:I1M4C2	InterPro:IPR002048	EnsemblPlants:KRH22671
ProteinID:KRH22671	ProteinID:KRH22671.1	PFAM:PF13202	PFAM:PF13405	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR10183	PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI00023CFB47	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:41088129..41090704

Molecular Weight (calculated)

24516.8 Da

IEP (calculated)

7.211

GRAVY (calculated)

-0.390

Length

218 amino acids

Sequence
(BLAST)

001: MSSSYGGYHS QSYAPSAPEQ PPYSNYNHTS SSTSNSSSSS FPAGTPQDVI RSFQMVDRDR SGFIDERELH QALSSGFHHF NFRTIRLLLF LFKNPHQPLT
101: IGPKEFAALW SCLGHWRGIF ERYDRDRSGK IDPLELRDAL YGIGYAVPGS VLQLLLSKYG DGSGRRVELG FDSFVECGMI IKGLTDKFKE KDTRYTGSAT
201: LSYDAFMTMV LPFLVSYD

Best Arabidopsis Sequence Match ( AT2G27480.1 )
(BLAST)

001: MSYSNAYAPS APELPESFVQ QQHDGESRYT YAYPSYQPTQ QFSSYSGMFS PETHPEIVRS FESADRNRSG FLEESELRQA LSLSGYDGIS NRTIRLLLFI
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD

Arabidopsis Description

CML48Probable calcium-binding protein CML48 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQH1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.