Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G134000.1 | Wheat | cytosol | 79.54 | 80.16 |
| TraesCS7B01G035100.1 | Wheat | cytosol | 77.99 | 74.54 |
| Os08t0558100-01 | Rice | cytosol | 67.18 | 68.77 |
| HORVU7Hr1G027810.6 | Barley | cytosol | 70.27 | 67.16 |
| Zm00001d049940_P002 | Maize | cytosol | 65.64 | 66.15 |
| EES14088 | Sorghum | cytosol | 68.73 | 65.93 |
| GSMUA_Achr3P22660_001 | Banana | plastid | 53.67 | 58.9 |
| VIT_06s0080g00450.t01 | Wine grape | plastid | 47.88 | 55.11 |
| KRH26648 | Soybean | cytosol, plastid | 43.24 | 52.58 |
| KRH22671 | Soybean | cytosol, plastid | 43.24 | 51.38 |
| Solyc11g068460.1.1 | Tomato | cytosol, plastid | 47.49 | 49.4 |
| CDX83268 | Canola | cytosol | 39.0 | 45.29 |
| CDY31179 | Canola | cytosol | 38.61 | 44.84 |
| Bra000510.1-P | Field mustard | cytosol | 38.22 | 44.39 |
| AT2G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 37.84 | 42.98 |
| PGSC0003DMT400067730 | Potato | cytosol, plastid | 40.15 | 35.86 |
| TraesCS5D01G142800.1 | Wheat | nucleus | 42.86 | 33.43 |
| TraesCS4D01G127600.1 | Wheat | cytosol | 41.31 | 33.13 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G133400.1 | EnsemblPlantsGene:TraesCS7D01G133400 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR10183 | PANTHER:PTHR10183:SF372 |
| PFAM:PF13405 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 | SUPFAM:SSF47473 |
| TIGR:cd16180 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:84595604..84597455
Molecular Weight (calculated)
28005.6 Da
IEP (calculated)
6.302
GRAVY (calculated)
-0.418
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MADYNRYGHV HGQGYGQQNY GYAPTLSSSP YGNGQGYGHA PSAPPAPTPS SSSPYGYGYG HGQGGYPPPM GGGFGGAVAF PPGTHPDVER AFRAADRDGS
101: GSIDEGELQA ALSDAHHRFS IRTVRLLMFL FSDAQLASSP RSRMGPTEFV TLWNCLGQWR VVFDRYDRDR SGKIDSDELR EALRGLGYAV PPSVIDLLIA
201: NYNNGVSHRG ALDFDNFVEC GMVVKGLTEK FKENDTRYTG SAALTYDGFL SMVVPFIVP
101: GSIDEGELQA ALSDAHHRFS IRTVRLLMFL FSDAQLASSP RSRMGPTEFV TLWNCLGQWR VVFDRYDRDR SGKIDSDELR EALRGLGYAV PPSVIDLLIA
201: NYNNGVSHRG ALDFDNFVEC GMVVKGLTEK FKENDTRYTG SAALTYDGFL SMVVPFIVP
001: MSYSNAYAPS APELPESFVQ QQHDGESRYT YAYPSYQPTQ QFSSYSGMFS PETHPEIVRS FESADRNRSG FLEESELRQA LSLSGYDGIS NRTIRLLLFI
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD
Arabidopsis Description
CML48Probable calcium-binding protein CML48 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQH1]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.