Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G077800.1 | Wheat | cytosol | 98.25 | 98.25 |
| TraesCS4D01G076200.1 | Wheat | cytosol, mitochondrion | 97.81 | 97.81 |
| Os03t0606100-01 | Rice | cytosol | 83.81 | 87.05 |
| TraesCS5A01G072300.1 | Wheat | cytosol | 83.37 | 82.29 |
| EER91248 | Sorghum | cytosol | 82.28 | 80.51 |
| Zm00001d013746_P001 | Maize | cytosol | 80.09 | 79.05 |
| HORVU4Hr1G013190.8 | Barley | mitochondrion | 84.46 | 76.44 |
| VIT_03s0091g00410.t01 | Wine grape | plastid | 71.55 | 68.84 |
| KRH35700 | Soybean | plastid | 69.15 | 68.4 |
| KRG91072 | Soybean | plastid | 69.15 | 68.25 |
| PGSC0003DMT400066530 | Potato | plastid | 69.58 | 67.66 |
| GSMUA_Achr7P00620_001 | Banana | mitochondrion | 59.96 | 67.32 |
| Solyc01g107350.2.1 | Tomato | plastid | 69.15 | 67.23 |
| CDY50147 | Canola | mitochondrion | 63.24 | 65.83 |
| CDX95439 | Canola | mitochondrion | 62.58 | 65.75 |
| VIT_18s0001g09450.t01 | Wine grape | plastid | 67.18 | 65.46 |
| PGSC0003DMT400055468 | Potato | plastid | 65.43 | 63.62 |
| KRH05611 | Soybean | plastid | 65.86 | 63.24 |
| CDY67693 | Canola | mitochondrion | 62.8 | 63.22 |
| KRH15430 | Soybean | plastid | 64.99 | 62.79 |
| Bra038214.1-P | Field mustard | mitochondrion, plastid | 62.8 | 62.53 |
| CDY46168 | Canola | mitochondrion | 62.36 | 62.5 |
| Bra022430.1-P | Field mustard | mitochondrion, plastid | 63.68 | 62.05 |
| TraesCS2A01G194900.1 | Wheat | nucleus | 68.93 | 62.01 |
| AT3G19540.1 | Thale cress | plastid | 65.21 | 61.44 |
| CDY16530 | Canola | plastid | 60.39 | 61.06 |
| CDY32838 | Canola | plastid | 60.39 | 60.66 |
| Bra014219.1-P | Field mustard | plastid | 61.27 | 57.38 |
| AT1G49840.1 | Thale cress | plastid | 61.71 | 57.09 |
| AT1G27690.1 | Thale cress | plastid | 53.39 | 56.35 |
| CDY03939 | Canola | cytosol | 14.44 | 55.93 |
| Solyc04g078190.2.1 | Tomato | nucleus, plastid | 35.67 | 55.63 |
| CDY67976 | Canola | mitochondrion, plastid | 53.17 | 47.93 |
| CDX90103 | Canola | mitochondrion, plastid | 52.95 | 47.73 |
| TraesCS4A01G020600.1 | Wheat | cytosol | 37.86 | 47.14 |
| Bra010924.1-P | Field mustard | mitochondrion, plastid | 54.7 | 46.82 |
| TraesCS4A01G093200.1 | Wheat | cytosol, nucleus, plastid | 42.89 | 43.85 |
| TraesCS3A01G302500.1 | Wheat | cytosol | 35.89 | 42.71 |
| TraesCS1A01G133000.1 | Wheat | cytosol | 37.2 | 37.61 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G237300.1 | EnsemblPlantsGene:TraesCS4A01G237300 | InterPro:DUF620 | PANTHER:PTHR31300 | PANTHER:PTHR31300:SF20 | PFAM:PF04788 |
| SEG:seg | MapMan:27.4.5.3 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:546210168..546212042
Molecular Weight (calculated)
49262.0 Da
IEP (calculated)
8.843
GRAVY (calculated)
-0.226
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MERTQGFFAA LKQEVARGLS PARARRSSES ADLDAAALRF SGPGEMLAPL MEGPDPESGD GYGRAAGGAR REGWGRWVRG QLARTPSSVA AAAAGAGAAR
101: NDLRLLLGVM GAPLAPVHVC AAEPLPHLSI KDTPIETSSA QYILQQYLAA SGGHRLLASV RNSYAMGKVR MVATEFENAG RLVKNRNAAR CAEPGRFVLW
201: QMAPEKWYIE LAVGGSKVHA GCNGKLVWRH TPWLGSHAAK GPVRPLRRAL QGLDPLTAAS MFAGARCIGE RKVNGEDCFI LKLCTDPETL KARTEGLAEI
301: IRHVMFGYFS QRTGLLVHIE DSHLTRIQST TGGDAVYWET TINSFIEDYR PVDGIMIAHS GRSAVTLFRF GEVAMSHTKT RMEEAWSIEE VAFNVPGLSM
401: DCFIPPTDIK SGSVSETVEL PHGGEKSKFG PPPGHRAKVA ALEKTDGGEL AWRGAHT
101: NDLRLLLGVM GAPLAPVHVC AAEPLPHLSI KDTPIETSSA QYILQQYLAA SGGHRLLASV RNSYAMGKVR MVATEFENAG RLVKNRNAAR CAEPGRFVLW
201: QMAPEKWYIE LAVGGSKVHA GCNGKLVWRH TPWLGSHAAK GPVRPLRRAL QGLDPLTAAS MFAGARCIGE RKVNGEDCFI LKLCTDPETL KARTEGLAEI
301: IRHVMFGYFS QRTGLLVHIE DSHLTRIQST TGGDAVYWET TINSFIEDYR PVDGIMIAHS GRSAVTLFRF GEVAMSHTKT RMEEAWSIEE VAFNVPGLSM
401: DCFIPPTDIK SGSVSETVEL PHGGEKSKFG PPPGHRAKVA ALEKTDGGEL AWRGAHT
001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
Arabidopsis Description
AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.