Factsheet for TraesCS7B01G154600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G258600.1	Wheat	nucleus	90.49	89.81
TraesCS7A01G257600.1	Wheat	nucleus	78.33	77.74
Zm00001d031586_P001	Maize	cytosol	50.19	52.8
HORVU7Hr1G053470.4	Barley	cytosol, mitochondrion, plastid	52.47	51.3
TraesCS5B01G282300.1	Wheat	cytosol, mitochondrion, nucleus	33.46	44.9
GSMUA_Achr5P25250_001	Banana	cytosol	31.18	30.37
Bra015092.1-P	Field mustard	nucleus	23.57	29.95
Solyc06g007880.1.1	Tomato	nucleus	20.53	29.03
AT4G13100.2	Thale cress	extracellular	27.0	26.79
CDY69745	Canola	cytosol	24.71	26.53
AT3G25030.4	Thale cress	cytosol	25.1	26.4
CDX77379	Canola	cytosol	24.71	26.0
PGSC0003DMT400003096	Potato	nucleus	19.77	26.0
TraesCS3B01G459700.1	Wheat	cytosol, mitochondrion, nucleus	24.71	25.79
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	30.04	24.23
CDY24647	Canola	nucleus	19.39	23.94
Bra029623.1-P	Field mustard	nucleus	19.01	23.36
KRH07558	Soybean	nucleus	22.81	22.9
CDY05318	Canola	nucleus	18.25	22.64
KRH66042	Soybean	nucleus	22.05	21.25
OQU80845	Sorghum	mitochondrion	38.4	21.09
Bra001236.1-P	Field mustard	nucleus	17.11	20.36
Bra040362.1-P	Field mustard	nucleus	20.15	15.32
CDX74062	Canola	cytosol, nucleus, plastid	19.39	15.09
AT3G07120.1	Thale cress	nucleus	18.25	13.33

Protein Annotations

EnsemblPlants:TraesCS7B01G154600.1	EnsemblPlantsGene:TraesCS7B01G154600	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR12183	PANTHER:PTHR12183:SF17	PFAM:PF13920	PFscan:PS50089
ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16449	MapMan:35.2

Description

No Description!

Coordinates

chr7B:-:206336927..206337718

Molecular Weight (calculated)

27341.2 Da

IEP (calculated)

4.549

GRAVY (calculated)

-0.282

Length

263 amino acids

Sequence
(BLAST)

001: MEGRVLRRSV TLADQLAAVG PPAAAPPGQP GSCNLRDLLK LRDEDDGRRA AAVTLASAMQ ADRRASPSPP SSSAAVAAAA ARTLLDIIRD DQPAPPASHA
101: AVAAGDPFVR RAVSLPAPQT TPAPGPALTR PVAAPVTPPE ASPPQPPTDR EEEEEEQGER VSLMALLEQT ERQWSAGATV QQQEQDPASE PSSQEALVPE
201: DDAELPEPGR GAGCCCVCMA RAKGAAFIPC GHTFCRACAR ELLAGRGRCP LCNAAILDVL DIF

Best Arabidopsis Sequence Match ( AT4G13100.4 )
(BLAST)

001: MDGGDRLRVT LLDRMSTVEN GRSSVTLEDI LMAETSSFRS LTTPTTPVRN HSSSSLLDVM RRERRRDKTA WKSLRDKLRL KRTATGWISS NPIPTLDNHI
101: LTPDNDSHRF NRLGFLLTNS ETNRSSRDVS DAAEEAAERE GRLRLGTVLA AEREEMQPPR MSLMELLEDN DGHMYELSAR DEVEVEGRDG CDGGGEAVAV
201: TGAAELGCCV CMVRSKGAAF IPCGHTFCRL CSRELWVQRG NCPLCNTAIL QVLDIF

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JS86]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.