Factsheet for Zm00001d031586_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G154600.1	Wheat	nucleus	52.8	50.19
TraesCS7A01G257600.1	Wheat	nucleus	51.2	48.3
TraesCS7D01G258600.1	Wheat	nucleus	50.0	47.17
Zm00001d021038_P001	Maize	nucleus	33.6	45.65
Zm00001d006078_P001	Maize	nucleus	33.6	43.75
GSMUA_Achr5P25250_001	Banana	cytosol	37.2	34.44
HORVU7Hr1G053470.4	Barley	cytosol, mitochondrion, plastid	35.6	33.09
Bra015092.1-P	Field mustard	nucleus	24.0	28.99
Solyc06g007880.1.1	Tomato	nucleus	20.8	27.96
CDY69745	Canola	cytosol	26.0	26.53
AT4G13100.2	Thale cress	extracellular	27.6	26.04
CDX77379	Canola	cytosol	26.0	26.0
PGSC0003DMT400003096	Potato	nucleus	20.8	26.0
AT3G25030.4	Thale cress	cytosol	24.4	24.4
OQU80845	Sorghum	mitochondrion	45.6	23.8
CDY24647	Canola	nucleus	19.6	23.0
Bra029623.1-P	Field mustard	nucleus	19.6	22.9
Zm00001d042359_P001	Maize	cytosol, mitochondrion, nucleus	28.0	22.88
Bra001236.1-P	Field mustard	nucleus	20.0	22.62
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	28.8	22.09
Zm00001d012045_P001	Maize	cytosol, mitochondrion, nucleus	26.4	22.07
CDY05318	Canola	nucleus	18.4	21.7
KRH07558	Soybean	nucleus	21.6	20.61
KRH66042	Soybean	nucleus	21.2	19.41
CDX74062	Canola	cytosol, nucleus, plastid	22.8	16.86
Bra040362.1-P	Field mustard	nucleus	22.4	16.18
AT3G07120.1	Thale cress	nucleus	22.4	15.56

Protein Annotations

EnsemblPlants:Zm00001d031586_P001	EnsemblPlants:Zm00001d031586_T001	EnsemblPlantsGene:Zm00001d031586	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR12183	PANTHER:PTHR12183:SF17	PFAM:PF13920
PFscan:PS50089	PFscan:PS51257	ProteinID:ONM03174.1	ScanProsite:PS00518	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0002207CEE	UniProt:A0A1D6KJR8	MapMan:35.2	:	:

Description

RING/U-box superfamily protein

Coordinates

chr1:-:195523691..195524443

Molecular Weight (calculated)

25422.1 Da

IEP (calculated)

4.690

GRAVY (calculated)

-0.092

Length

250 amino acids

Sequence
(BLAST)

001: MEGRVLRRSV TLADQLAAVA PAPAPLPPPG AAGSCNLRDL LKLRDEDDLA SAGRRAAVTL ASAMAAERQV QVPAASPSPS PSPSSPAAAT RTLLDIIRDD
101: QPPAAGAGDP LVRRAVSLPP PTTASPPAPA PAAEAAPPPS PPPAAADEHE QEQEQEQRVS LMALLEQTDR QWSAVPGAAA QAEEDEDSAA AAAGRGVVAG
201: CCCVCMARAK GAAFIPCGHT FCRGCARELL GGRGRCPLCN AAIVDVLDIF

Best Arabidopsis Sequence Match ( AT3G25030.3 )
(BLAST)

001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKQEAS SVEGRIRLGA
101: VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN
201: TTILEVLDLF

Arabidopsis Description

At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.