Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029623.1-P | Field mustard | nucleus | 43.93 | 71.03 |
| Bra001236.1-P | Field mustard | nucleus | 44.22 | 69.23 |
| AT3G07120.1 | Thale cress | nucleus | 63.29 | 60.83 |
| GSMUA_Achr8P08650_001 | Banana | nucleus | 12.43 | 45.26 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 33.24 | 35.28 |
| HORVU4Hr1G069780.1 | Barley | nucleus | 15.9 | 32.74 |
| Zm00001d021038_P001 | Maize | nucleus | 17.34 | 32.61 |
| HORVU5Hr1G123180.1 | Barley | cytosol, nucleus | 17.05 | 31.05 |
| Zm00001d006078_P001 | Maize | nucleus | 17.05 | 30.73 |
| KRG99707 | Soybean | nucleus | 31.21 | 30.25 |
| KRH46683 | Soybean | nucleus | 30.92 | 30.14 |
| Bra015092.1-P | Field mustard | nucleus | 17.63 | 29.47 |
| OQU89743 | Sorghum | mitochondrion, nucleus, plastid | 17.63 | 29.33 |
| HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 15.03 | 29.21 |
| EES04107 | Sorghum | nucleus | 24.57 | 28.91 |
| HORVU5Hr1G075810.1 | Barley | mitochondrion, nucleus | 15.61 | 28.42 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.39 | 27.82 |
| TraesCS5D01G291000.1 | Wheat | cytosol, mitochondrion, nucleus | 15.9 | 27.5 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 21.1 | 27.34 |
| TraesCS5A01G283800.1 | Wheat | mitochondrion, nucleus, peroxisome | 14.74 | 26.84 |
| TraesCS3A01G423800.1 | Wheat | cytosol | 19.65 | 26.67 |
| Zm00001d012045_P001 | Maize | cytosol, mitochondrion, nucleus | 22.54 | 26.09 |
| TraesCS5B01G282300.1 | Wheat | cytosol, mitochondrion, nucleus | 14.74 | 26.02 |
| Zm00001d042359_P001 | Maize | cytosol, mitochondrion, nucleus | 22.83 | 25.82 |
| TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 18.5 | 25.7 |
| Os09t0505000-00 | Rice | nucleus | 15.9 | 25.7 |
| TraesCS3B01G459700.1 | Wheat | cytosol, mitochondrion, nucleus | 18.5 | 25.4 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 16.18 | 23.83 |
| HORVU3Hr1G093580.1 | Barley | plastid | 19.08 | 23.83 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 18.5 | 23.7 |
| Os01t0917900-01 | Rice | nucleus | 21.39 | 23.64 |
| TraesCS3A01G259800.1 | Wheat | nucleus | 18.21 | 23.08 |
| TraesCS3D01G259900.1 | Wheat | nucleus | 17.92 | 22.88 |
| Zm00001d031586_P001 | Maize | cytosol | 16.18 | 22.4 |
| TraesCS7D01G258600.1 | Wheat | nucleus | 15.61 | 20.38 |
| TraesCS7B01G154600.1 | Wheat | nucleus | 15.32 | 20.15 |
| TraesCS7A01G257600.1 | Wheat | nucleus | 15.03 | 19.62 |
| HORVU7Hr1G053470.4 | Barley | cytosol, mitochondrion, plastid | 15.03 | 19.33 |
| HORVU3Hr1G064710.1 | Barley | cytosol | 16.76 | 16.91 |
| OQU80845 | Sorghum | mitochondrion | 19.08 | 13.78 |
| Bra013603.1-P | Field mustard | cytosol | 6.94 | 11.82 |
| Bra019391.1-P | Field mustard | nucleus | 6.07 | 10.66 |
| Bra034501.1-P | Field mustard | cytosol | 6.36 | 10.43 |
| Bra000784.1-P | Field mustard | nucleus | 6.07 | 10.4 |
Protein Annotations
| EnsemblPlants:Bra040362.1 | EnsemblPlants:Bra040362.1-P | EnsemblPlantsGene:Bra040362 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 |
| PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002544932 | UniProt:M4FGY4 |
| MapMan:35.2 | : | : | : | : | : |
Description
AT3G07120 (E=6e-094) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA01:-:28000949..28001989
Molecular Weight (calculated)
37576.4 Da
IEP (calculated)
4.323
GRAVY (calculated)
-0.714
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MSALKKRSNS LAGLSLDAVL GGEIVIPPPP SSPPSPPPLP QKSLAPHQTA ATTTTTTQTL FDIIRDEYIK EGQKDRTTWQ IFREKLRLKR TGSAWTTSLH
101: IPASDILIPN PKHPRPNATI PMSDPPGRGA FTRGPSMRVG SGKSHDDYSA DVSIPGDGPP NRSFKPQFSR HDSVRDHGDE DKILRHPVVK FVDERQMSAR
201: EAVAAQEAAE AEAAAASSDD DEEEEEDDSE EGEAAEKADA APKQTMSLMD LLEETDRQMG LTGASYAMDD EEEEYEDDEE EEEEEDGGGG GGEGEVNCCV
301: CQVNIKGATF TPCGHTFCKL CSKELSAQKG HCPVCSSFVL EFLEIF
101: IPASDILIPN PKHPRPNATI PMSDPPGRGA FTRGPSMRVG SGKSHDDYSA DVSIPGDGPP NRSFKPQFSR HDSVRDHGDE DKILRHPVVK FVDERQMSAR
201: EAVAAQEAAE AEAAAASSDD DEEEEEDDSE EGEAAEKADA APKQTMSLMD LLEETDRQMG LTGASYAMDD EEEEYEDDEE EEEEEDGGGG GGEGEVNCCV
301: CQVNIKGATF TPCGHTFCKL CSKELSAQKG HCPVCSSFVL EFLEIF
001: MSALKSRSNS LAGLSLDAVL GGEILIEPPS LPSPPPLPSK SLVPHRPTSQ TLFDIIREEY AKEGHKDRTT WQIFREKLRL KRTGSAWTSS LHIPASDILI
101: PNPKHIGTAF RSHSAGLNIR DLVHAIPMSD PPGSSGRAMF TRGSSMRVGS SKNPDDSPDI SVLEDGPPSR SFKPQLSRHD SVRDHSEGEE NNRRRHPIVT
201: FVEERQMSAR EAVAAQEAAE AEAAAAGGSE DEDDDDEEDD SGETEEMKSS SASEPKQTMS LMDLLEETDR QMGLTGSRYA MDEDEEYEED EEDENNEEEG
301: DSHGGGEGEL SCCVCMVKIK GASFTPCGHT FCKLCSKELM AQKGHCPVCS SFVLEFLEIF
101: PNPKHIGTAF RSHSAGLNIR DLVHAIPMSD PPGSSGRAMF TRGSSMRVGS SKNPDDSPDI SVLEDGPPSR SFKPQLSRHD SVRDHSEGEE NNRRRHPIVT
201: FVEERQMSAR EAVAAQEAAE AEAAAAGGSE DEDDDDEEDD SGETEEMKSS SASEPKQTMS LMDLLEETDR QMGLTGSRYA MDEDEEYEED EEDENNEEEG
301: DSHGGGEGEL SCCVCMVKIK GASFTPCGHT FCKLCSKELM AQKGHCPVCS SFVLEFLEIF
Arabidopsis Description
At3g07120 [Source:UniProtKB/TrEMBL;Acc:Q9SFU2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.