Factsheet for GSMUA_Achr5P25250_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P08650_001	Banana	nucleus	20.74	58.95
Zm00001d021038_P001	Maize	nucleus	27.04	39.67
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	33.7	38.72
HORVU5Hr1G075810.1	Barley	mitochondrion, nucleus	26.67	37.89
TraesCS5A01G283800.1	Wheat	mitochondrion, nucleus, peroxisome	26.3	37.37
Zm00001d031586_P001	Maize	cytosol	34.44	37.2
Zm00001d006078_P001	Maize	nucleus	25.19	35.42
OQU89743	Sorghum	mitochondrion, nucleus, plastid	27.04	35.1
TraesCS5B01G282300.1	Wheat	cytosol, mitochondrion, nucleus	25.19	34.69
GSMUA_AchrUn_...	Banana	nucleus	33.33	33.83
Solyc06g007880.1.1	Tomato	nucleus	22.96	33.33
GSMUA_Achr8P00880_001	Banana	nucleus	32.96	33.33
Os09t0505000-00	Rice	nucleus	25.56	32.24
TraesCS7A01G257600.1	Wheat	nucleus	31.48	32.08
TraesCS5D01G291000.1	Wheat	cytosol, mitochondrion, nucleus	23.7	32.0
TraesCS7B01G154600.1	Wheat	nucleus	30.37	31.18
PGSC0003DMT400003096	Potato	nucleus	22.96	31.0
TraesCS7D01G258600.1	Wheat	nucleus	30.37	30.94
Bra015092.1-P	Field mustard	nucleus	22.96	29.95
Bra029623.1-P	Field mustard	nucleus	22.96	28.97
CDY24647	Canola	nucleus	22.22	28.17
AT3G25030.4	Thale cress	cytosol	25.56	27.6
KRH07558	Soybean	nucleus	26.67	27.48
CDY69745	Canola	cytosol	24.81	27.35
CDX77379	Canola	cytosol	25.19	27.2
HORVU7Hr1G053470.4	Barley	cytosol, mitochondrion, plastid	26.67	26.77
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	32.22	26.69
CDY05318	Canola	nucleus	20.74	26.42
KRH66042	Soybean	nucleus	25.93	25.64
AT4G13100.2	Thale cress	extracellular	24.44	24.91
Bra001236.1-P	Field mustard	nucleus	20.0	24.43
CDX74062	Canola	cytosol, nucleus, plastid	23.33	18.64
Bra040362.1-P	Field mustard	nucleus	23.7	18.5
AT3G07120.1	Thale cress	nucleus	23.33	17.5
GSMUA_Achr3P12970_001	Banana	cytosol	10.37	16.18
OQU80845	Sorghum	mitochondrion	28.15	15.87
GSMUA_Achr1P18240_001	Banana	nucleus	8.52	13.07

Protein Annotations

EnsemblPlants:GSMUA_Achr5P25250_001	EnsemblPlants:GSMUA_Achr5T25250_001	EnsemblPlantsGene:GSMUA_Achr5G25250_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12183	PANTHER:PTHR12183:SF21	PFAM:PF13920	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002957CFE	UniProt:M0T1K0	MapMan:35.2

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_186.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr5G25250_001]

Coordinates

chr5:-:26327198..26328091

Molecular Weight (calculated)

28765.8 Da

IEP (calculated)

4.608

GRAVY (calculated)

-0.260

Length

270 amino acids

Sequence
(BLAST)

001: MEGRELRRGV TLSERLSVVH SSNLGDLLKV REEDDMRICR RRGGDSVTLE SIIACENREG SATSGGSGRT LLDIIHQEHE ASGIMADGNS SNEAHWMSLR
101: DRLRLHIDGL AVPEPTAASA TAAATELPSV SGGGSDEING SENSDPGGTA ESSAPAAVPA AAAEEEEEQP ARVSLLALLE QTDRQWGGSG RERLSLFAAA
201: PPEKEVAADE REGGGGVMLY MCCVCMVRHK GAAFIPCGHT FCRLCSRELW VSRGSCPLCN AYIVEILDIF

Best Arabidopsis Sequence Match ( AT3G25030.2 )
(BLAST)

001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF

Arabidopsis Description

At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.