Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05318 | Canola | nucleus | 45.28 | 76.89 |
| CDY24647 | Canola | nucleus | 41.94 | 70.89 |
| Bra029623.1-P | Field mustard | nucleus | 41.39 | 69.63 |
| Bra001236.1-P | Field mustard | nucleus | 41.11 | 66.97 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 60.56 | 64.5 |
| Bra040362.1-P | Field mustard | nucleus | 60.83 | 63.29 |
| GSMUA_Achr8P08650_001 | Banana | nucleus | 11.94 | 45.26 |
| HORVU4Hr1G069780.1 | Barley | nucleus | 14.72 | 31.55 |
| KRG99707 | Soybean | nucleus | 30.83 | 31.09 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 28.06 | 30.98 |
| HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 15.28 | 30.9 |
| HORVU5Hr1G123180.1 | Barley | cytosol, nucleus | 16.11 | 30.53 |
| KRH46683 | Soybean | nucleus | 29.72 | 30.14 |
| Zm00001d021038_P001 | Maize | nucleus | 15.28 | 29.89 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 21.67 | 29.21 |
| AT3G25030.4 | Thale cress | cytosol | 20.28 | 29.2 |
| HORVU5Hr1G075810.1 | Barley | mitochondrion, nucleus | 14.72 | 27.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.56 | 27.82 |
| AT4G13100.2 | Thale cress | extracellular | 20.28 | 27.55 |
| Zm00001d006078_P001 | Maize | nucleus | 14.17 | 26.56 |
| TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 18.33 | 26.51 |
| TraesCS5A01G283800.1 | Wheat | mitochondrion, nucleus, peroxisome | 13.89 | 26.32 |
| TraesCS3A01G423800.1 | Wheat | cytosol | 18.61 | 26.27 |
| EES04107 | Sorghum | nucleus | 21.39 | 26.19 |
| TraesCS5B01G282300.1 | Wheat | cytosol, mitochondrion, nucleus | 14.17 | 26.02 |
| TraesCS5D01G291000.1 | Wheat | cytosol, mitochondrion, nucleus | 14.44 | 26.0 |
| OQU89743 | Sorghum | mitochondrion, nucleus, plastid | 15.0 | 25.96 |
| Zm00001d012045_P001 | Maize | cytosol, mitochondrion, nucleus | 21.11 | 25.42 |
| TraesCS3B01G459700.1 | Wheat | cytosol, mitochondrion, nucleus | 17.5 | 25.0 |
| Os01t0917900-01 | Rice | nucleus | 21.11 | 24.28 |
| Zm00001d042359_P001 | Maize | cytosol, mitochondrion, nucleus | 20.56 | 24.18 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 15.28 | 23.4 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 17.5 | 23.33 |
| Zm00001d031586_P001 | Maize | cytosol | 15.56 | 22.4 |
| HORVU3Hr1G093580.1 | Barley | plastid | 17.22 | 22.38 |
| Os09t0505000-00 | Rice | nucleus | 13.06 | 21.96 |
| HORVU7Hr1G053470.4 | Barley | cytosol, mitochondrion, plastid | 14.17 | 18.96 |
| TraesCS3A01G259800.1 | Wheat | nucleus | 14.17 | 18.68 |
| TraesCS7A01G257600.1 | Wheat | nucleus | 13.61 | 18.49 |
| TraesCS7B01G154600.1 | Wheat | nucleus | 13.33 | 18.25 |
| TraesCS7D01G258600.1 | Wheat | nucleus | 13.33 | 18.11 |
| TraesCS3D01G259900.1 | Wheat | nucleus | 13.61 | 18.08 |
| HORVU3Hr1G064710.1 | Barley | cytosol | 15.0 | 15.74 |
| OQU80845 | Sorghum | mitochondrion | 19.44 | 14.61 |
| AT4G22250.1 | Thale cress | cytosol | 6.67 | 11.21 |
| AT4G03965.1 | Thale cress | cytosol | 6.11 | 10.53 |
| AT1G62370.1 | Thale cress | cytosol | 5.28 | 9.31 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:819898 | ProteinID:AAF20234.1 | ProteinID:AEE74501.1 | ArrayExpress:AT3G07120 |
| EnsemblPlantsGene:AT3G07120 | RefSeq:AT3G07120 | TAIR:AT3G07120 | RefSeq:AT3G07120-TAIR-G | EnsemblPlants:AT3G07120.1 | TAIR:AT3G07120.1 |
| Unigene:At.40398 | EMBL:BT020309 | EMBL:BT020575 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_187368.1 |
| PFAM:PF13920 | PFscan:PS50089 | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | UniProt:Q9SFU2 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI00000A6D92 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
At3g07120 [Source:UniProtKB/TrEMBL;Acc:Q9SFU2]
Coordinates
chr3:+:2254479..2255742
Molecular Weight (calculated)
39453.7 Da
IEP (calculated)
4.473
GRAVY (calculated)
-0.699
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MSALKSRSNS LAGLSLDAVL GGEILIEPPS LPSPPPLPSK SLVPHRPTSQ TLFDIIREEY AKEGHKDRTT WQIFREKLRL KRTGSAWTSS LHIPASDILI
101: PNPKHIGTAF RSHSAGLNIR DLVHAIPMSD PPGSSGRAMF TRGSSMRVGS SKNPDDSPDI SVLEDGPPSR SFKPQLSRHD SVRDHSEGEE NNRRRHPIVT
201: FVEERQMSAR EAVAAQEAAE AEAAAAGGSE DEDDDDEEDD SGETEEMKSS SASEPKQTMS LMDLLEETDR QMGLTGSRYA MDEDEEYEED EEDENNEEEG
301: DSHGGGEGEL SCCVCMVKIK GASFTPCGHT FCKLCSKELM AQKGHCPVCS SFVLEFLEIF
101: PNPKHIGTAF RSHSAGLNIR DLVHAIPMSD PPGSSGRAMF TRGSSMRVGS SKNPDDSPDI SVLEDGPPSR SFKPQLSRHD SVRDHSEGEE NNRRRHPIVT
201: FVEERQMSAR EAVAAQEAAE AEAAAAGGSE DEDDDDEEDD SGETEEMKSS SASEPKQTMS LMDLLEETDR QMGLTGSRYA MDEDEEYEED EEDENNEEEG
301: DSHGGGEGEL SCCVCMVKIK GASFTPCGHT FCKLCSKELM AQKGHCPVCS SFVLEFLEIF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.