Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G069780.1 | Barley | nucleus | 74.74 | 84.52 |
| HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 65.26 | 69.66 |
| TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 46.84 | 35.74 |
| HORVU3Hr1G093580.1 | Barley | plastid | 50.53 | 34.66 |
| TraesCS3B01G459700.1 | Wheat | cytosol, mitochondrion, nucleus | 45.79 | 34.52 |
| TraesCS3A01G423800.1 | Wheat | cytosol | 38.95 | 29.02 |
| Bra015092.1-P | Field mustard | nucleus | 31.05 | 28.5 |
| HORVU5Hr1G075810.1 | Barley | mitochondrion, nucleus | 27.89 | 27.89 |
| Solyc06g007880.1.1 | Tomato | nucleus | 26.32 | 26.88 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 35.79 | 25.47 |
| CDY05318 | Canola | nucleus | 27.89 | 25.0 |
| AT3G25030.4 | Thale cress | cytosol | 31.58 | 24.0 |
| CDX77379 | Canola | cytosol | 31.58 | 24.0 |
| Zm00001d042359_P001 | Maize | cytosol, mitochondrion, nucleus | 38.42 | 23.86 |
| EES04107 | Sorghum | nucleus | 36.84 | 23.81 |
| Zm00001d012045_P001 | Maize | cytosol, mitochondrion, nucleus | 37.37 | 23.75 |
| PGSC0003DMT400003096 | Potato | nucleus | 24.74 | 23.5 |
| CDY69745 | Canola | cytosol | 30.0 | 23.27 |
| CDY24647 | Canola | nucleus | 25.79 | 23.0 |
| Bra029623.1-P | Field mustard | nucleus | 25.79 | 22.9 |
| Bra001236.1-P | Field mustard | nucleus | 26.32 | 22.62 |
| Os01t0917900-01 | Rice | nucleus | 36.84 | 22.36 |
| KRH07558 | Soybean | nucleus | 30.0 | 21.76 |
| AT4G13100.2 | Thale cress | extracellular | 29.47 | 21.13 |
| KRH66042 | Soybean | nucleus | 28.95 | 20.15 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 34.21 | 19.94 |
| HORVU7Hr1G053470.4 | Barley | cytosol, mitochondrion, plastid | 25.26 | 17.84 |
| Bra040362.1-P | Field mustard | nucleus | 31.05 | 17.05 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 29.47 | 16.57 |
| AT3G07120.1 | Thale cress | nucleus | 30.53 | 16.11 |
| HORVU3Hr1G064710.1 | Barley | cytosol | 15.26 | 8.45 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G123180.1 | EnsemblPlantsGene:HORVU5Hr1G123180 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF22 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000B479E9C | UniProt:A0A287T0R9 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr5H:-:663421413..663421987
Molecular Weight (calculated)
20911.4 Da
IEP (calculated)
6.849
GRAVY (calculated)
-0.803
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: RRQWSLEAGE LEEPRRGLVV DEMRPRGRAE YGDASARRRR RPVVATRTAG PTRGGADDRD GAGRASTDRG RSGARGGRIG TQGRPAATAS TSLMTLLERA
101: DSHLDESGEL GGASRCGAVD DNEEDGHRER HEEEEEEEVQ VCCVCMVRHK GAAFIPCGHT FCRLCSRELQ HTRGNCPLCN VFIQDILHIF
101: DSHLDESGEL GGASRCGAVD DNEEDGHRER HEEEEEEEVQ VCCVCMVRHK GAAFIPCGHT FCRLCSRELQ HTRGNCPLCN VFIQDILHIF
001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKQEAS SVEGRIRLGA
101: VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN
201: TTILEVLDLF
101: VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN
201: TTILEVLDLF
Arabidopsis Description
At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.