Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04107 | Sorghum | nucleus | 70.57 | 71.77 |
| Os01t0917900-01 | Rice | nucleus | 58.86 | 56.23 |
| Zm00001d042359_P001 | Maize | cytosol, mitochondrion, nucleus | 56.19 | 54.9 |
| TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 35.12 | 42.17 |
| TraesCS3B01G459700.1 | Wheat | cytosol, mitochondrion, nucleus | 34.11 | 40.48 |
| HORVU4Hr1G069780.1 | Barley | nucleus | 22.41 | 39.88 |
| TraesCS3D01G259900.1 | Wheat | nucleus | 35.45 | 39.11 |
| TraesCS3A01G259800.1 | Wheat | nucleus | 35.45 | 38.83 |
| HORVU3Hr1G093580.1 | Barley | plastid | 35.45 | 38.27 |
| TraesCS3A01G423800.1 | Wheat | cytosol | 32.11 | 37.65 |
| HORVU5Hr1G123180.1 | Barley | cytosol, nucleus | 23.75 | 37.37 |
| HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 21.74 | 36.52 |
| Zm00001d021038_P001 | Maize | nucleus | 21.74 | 35.33 |
| PGSC0003DMT400003096 | Potato | nucleus | 22.07 | 33.0 |
| HORVU3Hr1G064710.1 | Barley | cytosol | 37.79 | 32.94 |
| Solyc06g007880.1.1 | Tomato | nucleus | 20.4 | 32.8 |
| Bra015092.1-P | Field mustard | nucleus | 21.74 | 31.4 |
| Zm00001d006078_P001 | Maize | nucleus | 19.73 | 30.73 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 26.42 | 29.59 |
| CDX77379 | Canola | cytosol | 24.08 | 28.8 |
| CDY05318 | Canola | nucleus | 20.07 | 28.3 |
| CDY69745 | Canola | cytosol | 23.08 | 28.16 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 30.1 | 27.61 |
| AT3G25030.4 | Thale cress | cytosol | 22.41 | 26.8 |
| Zm00001d031586_P001 | Maize | cytosol | 22.07 | 26.4 |
| Bra001236.1-P | Field mustard | nucleus | 19.4 | 26.24 |
| AT4G13100.2 | Thale cress | extracellular | 23.08 | 26.04 |
| KRH07558 | Soybean | nucleus | 22.74 | 25.95 |
| CDY24647 | Canola | nucleus | 18.39 | 25.82 |
| Bra029623.1-P | Field mustard | nucleus | 18.39 | 25.7 |
| KRH66042 | Soybean | nucleus | 21.07 | 23.08 |
| Bra040362.1-P | Field mustard | nucleus | 26.09 | 22.54 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 25.42 | 22.49 |
| AT3G07120.1 | Thale cress | nucleus | 25.42 | 21.11 |
Protein Annotations
| EnsemblPlants:Zm00001d012045_P001 | EnsemblPlants:Zm00001d012045_T001 | EnsemblPlantsGene:Zm00001d012045 | EntrezGene:103636359 | Gene3D:3.30.40.10 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:AQK98698.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002220F82 |
| UniProt:K7V652 | MapMan:35.2 | : | : | : | : |
Description
Putative RING zinc finger domain superfamily protein
Coordinates
chr8:+:167198280..167199179
Molecular Weight (calculated)
32760.4 Da
IEP (calculated)
4.505
GRAVY (calculated)
-0.869
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGRRPEMRR TMTLSEQLST PDPLIRDFLK IPHDADAGEG DSPSAVDAQG GGRTTGWKQL RDRLRLRRAA GAWQRRKTGA AAAHAPANGG GLSNISSANN
101: RSNKYNYNPG EAEAAFSRTF SRAPSLRATP TFSRVASTRV GPASCRSSSR RLSTYDFRDV EERRHEDEDE DGDGEEEEDG EDEGDEEKTA APAAQMSLMA
201: LLGQTDNQWD DDEDEEEESG GGAFKKGGAG AVGDEDEDDC DSREDEMVHV CCVCMVRHKG AAFIPCGHTF CRLCSRELWV SRGNCPLCNG FIQEILDIF
101: RSNKYNYNPG EAEAAFSRTF SRAPSLRATP TFSRVASTRV GPASCRSSSR RLSTYDFRDV EERRHEDEDE DGDGEEEEDG EDEGDEEKTA APAAQMSLMA
201: LLGQTDNQWD DDEDEEEESG GGAFKKGGAG AVGDEDEDDC DSREDEMVHV CCVCMVRHKG AAFIPCGHTF CRLCSRELWV SRGNCPLCNG FIQEILDIF
001: MIQMDGGDRL RVTLLDRMST VENGRSSVTL EDILMAETSS FRSLTTPTTP VRNHSSSSLL DVMRRERRRD KTAWKSLRDK LRLKRTATGW ISSNPIPTLD
101: NHILTPDNDS HRFNRLGFLL TNSETNRSSR DVSDAAEEAA EREGRLRLGT VLAAEREEMQ PPRMSLMELL EDNDGHMYEL SARDEVEVEG RDGCDGGGEA
201: VAVTGAAELG CCVCMVRSKG AAFIPCGHTF CRLCSRELWV QRGNCPLCNT AILQVLDIF
101: NHILTPDNDS HRFNRLGFLL TNSETNRSSR DVSDAAEEAA EREGRLRLGT VLAAEREEMQ PPRMSLMELL EDNDGHMYEL SARDEVEVEG RDGCDGGGEA
201: VAVTGAAELG CCVCMVRSKG AAFIPCGHTF CRLCSRELWV QRGNCPLCNT AILQVLDIF
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JS86]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.