Factsheet for TraesCS3A01G259800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G259900.1	Wheat	nucleus	95.24	95.94
HORVU3Hr1G064710.1	Barley	cytosol	77.66	61.81
EES04107	Sorghum	nucleus	41.39	38.44
Os01t0917900-01	Rice	nucleus	43.59	38.02
Zm00001d012045_P001	Maize	cytosol, mitochondrion, nucleus	38.83	35.45
Zm00001d042359_P001	Maize	cytosol, mitochondrion, nucleus	34.43	30.72
TraesCS3A01G423800.1	Wheat	cytosol	21.98	23.53
GSMUA_Achr8P00880_001	Banana	nucleus	21.61	22.1
CDY05318	Canola	nucleus	15.75	20.28
TraesCS5A01G283800.1	Wheat	mitochondrion, nucleus, peroxisome	13.92	20.0
CDY24647	Canola	nucleus	15.38	19.72
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	23.44	19.63
Bra029623.1-P	Field mustard	nucleus	15.02	19.16
Solyc06g007880.1.1	Tomato	nucleus	12.82	18.82
Bra001236.1-P	Field mustard	nucleus	15.02	18.55
Bra040362.1-P	Field mustard	nucleus	23.08	18.21
TraesCS7A01G257600.1	Wheat	nucleus	17.58	18.11
Bra015092.1-P	Field mustard	nucleus	13.19	17.39
CDX77379	Canola	cytosol	15.75	17.2
PGSC0003DMT400003096	Potato	nucleus	12.45	17.0
AT3G25030.4	Thale cress	cytosol	15.38	16.8
KRH07558	Soybean	nucleus	15.75	16.41
CDX74062	Canola	cytosol, nucleus, plastid	20.15	16.27
CDY69745	Canola	cytosol	13.92	15.51
KRH66042	Soybean	nucleus	14.65	14.65
AT3G07120.1	Thale cress	nucleus	18.68	14.17
AT4G13100.2	Thale cress	extracellular	13.55	13.96

Protein Annotations

EnsemblPlants:TraesCS3A01G259800.1	EnsemblPlantsGene:TraesCS3A01G259800	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR12183	PANTHER:PTHR12183:SF20	PFAM:PF13920	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16449	MapMan:35.2	:

Description

No Description!

Coordinates

chr3A:+:482092658..482093479

Molecular Weight (calculated)

29825.2 Da

IEP (calculated)

4.438

GRAVY (calculated)

-0.792

Length

273 amino acids

Sequence
(BLAST)

001: MERRPELRRS MTLSEQLSRP DPAIREFLKI PDDDSHLSAD AGGGGGSGGM INWKPLRDRL RLRRSVNAWS SPSERPSTAD GAGSLKNSGS GSNRSHKYIY
101: AQGEATAAFC RTSSLRQTPA FSRAASTRVG SNATIGRSPP VVDGEGSEDE SEHDEDEEEG KEEEDAPTAQ MSLMALLEQT DSWDEEEEEE EQQAAAGGGA
201: SSKNAHAEEE EEDGEGREEE MVHVCCVCMV RHKGAAFIPC GHTFCRLCSR ELWVSRGNCP LCNGFIQEIL DIF

Best Arabidopsis Sequence Match ( AT4G13100.3 )
(BLAST)

001: MIQMDGGDRL RVTLLDRMST VENGRSSVTL EDILMAETSS FRSLTTPTTP VRNHSSSSLL DVMRRERRRD KTAWKSLRDK LRLKRTATGW ISSNPIPTLD
101: NHILTPDNDS HRFNRLGFLL TNSETNRSSR DVSDAAEEAA EREGRLRLGT VLAAEREPPR MSLMELLEDN DGHMYELSAR DEVEVEGRDG CDGGGEAVAV
201: TGAAELGCCV CMVRSKGAAF IPCGHTFCRL CSRELWVQRG NCPLCNTAIL QVLDIF

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JS86]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.