Factsheet for TraesCS3D01G259900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G259800.1	Wheat	nucleus	95.94	95.24
HORVU3Hr1G064710.1	Barley	cytosol	78.97	62.39
EES04107	Sorghum	nucleus	42.44	39.12
Os01t0917900-01	Rice	nucleus	44.28	38.34
Zm00001d012045_P001	Maize	cytosol, mitochondrion, nucleus	39.11	35.45
Zm00001d042359_P001	Maize	cytosol, mitochondrion, nucleus	35.79	31.7
TraesCS3D01G419000.1	Wheat	cytosol, mitochondrion, nucleus	25.46	27.71
GSMUA_Achr8P00880_001	Banana	nucleus	21.77	22.1
TraesCS5D01G291000.1	Wheat	cytosol, mitochondrion, nucleus	15.13	20.5
CDY05318	Canola	nucleus	15.87	20.28
CDY24647	Canola	nucleus	15.87	20.19
Bra029623.1-P	Field mustard	nucleus	15.5	19.63
Solyc06g007880.1.1	Tomato	nucleus	13.28	19.35
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	23.25	19.33
Bra001236.1-P	Field mustard	nucleus	15.13	18.55
TraesCS7D01G258600.1	Wheat	nucleus	17.71	18.11
Bra040362.1-P	Field mustard	nucleus	22.88	17.92
AT3G25030.4	Thale cress	cytosol	15.87	17.2
PGSC0003DMT400003096	Potato	nucleus	12.55	17.0
Bra015092.1-P	Field mustard	nucleus	12.55	16.43
KRH07558	Soybean	nucleus	15.87	16.41
CDX77379	Canola	cytosol	15.13	16.4
CDX74062	Canola	cytosol, nucleus, plastid	20.3	16.27
KRH66042	Soybean	nucleus	15.13	15.02
CDY69745	Canola	cytosol	13.28	14.69
AT4G13100.2	Thale cress	extracellular	14.02	14.34
AT3G07120.1	Thale cress	nucleus	18.08	13.61

Protein Annotations

EnsemblPlants:TraesCS3D01G259900.1	EnsemblPlantsGene:TraesCS3D01G259900	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12183	PANTHER:PTHR12183:SF20	PFAM:PF13920	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16449	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr3D:+:361776499..361777314

Molecular Weight (calculated)

29541.8 Da

IEP (calculated)

4.457

GRAVY (calculated)

-0.775

Length

271 amino acids

Sequence
(BLAST)

001: MERRPELRRS MTLSEQLSRP DPAIREFLKI PDDNSHLSAD AGGGGGSGGT INWKPLRDRL RLRRSVNAWS SPSERPSTAD GAGSLKNSGS GSNRSHKYIY
101: AQGEATAAFC RTSSLRQTPA FSRAASTRVG SNATIGRSPP VVGDEGSEDE SDQDEDEEEG KEEEEAPTAQ MSLMALLEQT DSWDEEEEEE QAAAGAGASS
201: KNAHAEEEEE DGEGREEEMV HVCCVCMVRH KGAAFIPCGH TFCRLCSREL WVSRGNCPLC NGFIQEILDI F

Best Arabidopsis Sequence Match ( AT3G25030.2 )
(BLAST)

001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF

Arabidopsis Description

At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.