Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G154600.1 | Wheat | nucleus | 89.81 | 90.49 |
| TraesCS7A01G257600.1 | Wheat | nucleus | 82.64 | 82.64 |
| HORVU7Hr1G053470.4 | Barley | cytosol, mitochondrion, plastid | 53.58 | 52.79 |
| Zm00001d031586_P001 | Maize | cytosol | 47.17 | 50.0 |
| TraesCS5D01G291000.1 | Wheat | cytosol, mitochondrion, nucleus | 33.58 | 44.5 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 30.94 | 30.37 |
| Solyc06g007880.1.1 | Tomato | nucleus | 20.38 | 29.03 |
| Bra015092.1-P | Field mustard | nucleus | 22.26 | 28.5 |
| AT4G13100.2 | Thale cress | extracellular | 27.17 | 27.17 |
| TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 24.53 | 26.1 |
| PGSC0003DMT400003096 | Potato | nucleus | 19.62 | 26.0 |
| CDY69745 | Canola | cytosol | 23.77 | 25.71 |
| AT3G25030.4 | Thale cress | cytosol | 23.77 | 25.2 |
| CDX77379 | Canola | cytosol | 23.4 | 24.8 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 29.06 | 23.62 |
| CDY24647 | Canola | nucleus | 18.87 | 23.47 |
| Bra029623.1-P | Field mustard | nucleus | 18.49 | 22.9 |
| CDY05318 | Canola | nucleus | 18.11 | 22.64 |
| KRH07558 | Soybean | nucleus | 22.26 | 22.52 |
| KRH66042 | Soybean | nucleus | 21.89 | 21.25 |
| Bra001236.1-P | Field mustard | nucleus | 17.36 | 20.81 |
| OQU80845 | Sorghum | mitochondrion | 36.6 | 20.25 |
| TraesCS3D01G259900.1 | Wheat | nucleus | 18.11 | 17.71 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 20.0 | 15.68 |
| Bra040362.1-P | Field mustard | nucleus | 20.38 | 15.61 |
| AT3G07120.1 | Thale cress | nucleus | 18.11 | 13.33 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G258600.1 | EnsemblPlantsGene:TraesCS7D01G258600 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF17 | PFAM:PF13920 | PFscan:PS50089 |
| ScanProsite:PS00518 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16449 | MapMan:35.2 |
Description
No Description!
Coordinates
chr7D:-:234347981..234348778
Molecular Weight (calculated)
27565.5 Da
IEP (calculated)
4.543
GRAVY (calculated)
-0.218
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGRVLRRSV TLADQLAAVG PPAAAPPGQP GSCNLRDLLK LRDEDDGRRA AAVTLASAMQ ADRRANSSPP SSSAAVAAAA ARTLLDIIRD DQPAPPASHA
101: VVAAADPFVR RAVSLPAPQT TPAPGPALTR PVAAPVTPPE ASPPQPPTDR EEEEEEQGER VSLMALLEQT ERQWSAGATV QQEQDPAVAA SEPSSQDALV
201: PEDDVELPET GRGAGCCCVC MARAKGAAFI PCGHTFCRAC ARELFAGRGR CPLCNAAILD VLDIF
101: VVAAADPFVR RAVSLPAPQT TPAPGPALTR PVAAPVTPPE ASPPQPPTDR EEEEEEQGER VSLMALLEQT ERQWSAGATV QQEQDPAVAA SEPSSQDALV
201: PEDDVELPET GRGAGCCCVC MARAKGAAFI PCGHTFCRAC ARELFAGRGR CPLCNAAILD VLDIF
001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKQEAS SVEGRIRLGA
101: VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN
201: TTILEVLDLF
101: VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN
201: TTILEVLDLF
Arabidopsis Description
At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.