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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 4
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d031586_P001 Maize cytosol 23.8 45.6
TraesCS7B01G154600.1 Wheat nucleus 21.09 38.4
TraesCS7A01G257600.1 Wheat nucleus 20.88 37.74
TraesCS7D01G258600.1 Wheat nucleus 20.25 36.6
OQU89743 Sorghum mitochondrion, nucleus, plastid 15.24 35.1
HORVU7Hr1G053470.4 Barley cytosol, mitochondrion, plastid 19.21 34.2
Bra015092.1-P Field mustard nucleus 13.99 32.37
Solyc06g007880.1.1 Tomato nucleus 11.69 30.11
CDY69745 Canola cytosol 14.4 28.16
GSMUA_Achr5P25250_001 Banana cytosol 15.87 28.15
PGSC0003DMT400003096 Potato nucleus 11.69 28.0
CDX77379 Canola cytosol 14.4 27.6
CDY24647 Canola nucleus 12.11 27.23
Bra029623.1-P Field mustard nucleus 12.11 27.1
AT3G25030.4 Thale cress cytosol 13.36 25.6
Bra001236.1-P Field mustard nucleus 11.69 25.34
KRH07558 Soybean nucleus 13.78 25.19
VIT_00s0186g00090.t01 Wine grape cytosol, nucleus, plastid 16.91 24.85
AT4G13100.2 Thale cress extracellular 13.57 24.53
EES04107 Sorghum nucleus 15.03 24.49
CDY05318 Canola nucleus 10.65 24.06
KRH66042 Soybean nucleus 12.73 22.34
CDX74062 Canola cytosol, nucleus, plastid 15.66 22.19
AT3G07120.1 Thale cress nucleus 14.61 19.44
Bra040362.1-P Field mustard nucleus 13.78 19.08
Protein Annotations
Gene3D:3.30.40.10MapMan:35.2UniProt:A0A1Z5RBM3InterPro:IPR001841InterPro:IPR013083EnsemblPlants:OQU80845
ProteinID:OQU80845ProteinID:OQU80845.1PFAM:PF13920ScanProsite:PS00518PFscan:PS50089PANTHER:PTHR12183
PANTHER:PTHR12183:SF17SMART:SM00184EnsemblPlantsGene:SORBI_3007G196201SUPFAM:SSF57850UniParc:UPI000B8BAC59InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHDInterPro:Znf_RING_CSSEG:seg:::
Description
hypothetical protein
Coordinates
chr7:+:62804329..62806799
Molecular Weight (calculated)
49233.9 Da
IEP (calculated)
6.683
GRAVY (calculated)
-0.292
Length
479 amino acids
Sequence
(BLAST)
001: DHRTGRQAAA LGRFGSDVLR SSSWNKAGTR PRVSRTAQQT PPPPLPESLT DTGSSTARRT GGSAVRCGAP GRTHHSTRHA TADKRHPILP WQIRTPPRLA
101: PREPRCTARE PRGALITPSS AREIPQTRRT PPHTSPGAPL TFITSPHKRA CCCPSARPPI RIGASVPQQP LSGLQLPVSC ACVDVGEPAT CLASGGWRGG
201: VTLADQLAAV GPAPSVAVAG PGGAAAAGSC NLRDLLKLRD EDDLASAGRR AAVTLASAMA AERQVSAPSP SLSLSPPSSS SPATAAAAAA AAAARTLLDI
301: IRDDQPPASG PSSGDPFVRR AVSLPPPTTA TASPPAPTLA AAEAAPAPPP PPPAAAAADE EEQEQRVSLM ALLEQTDRQW SAVPGATTQP EEEEEEEEEE
401: DSAALEALEP VDDDAELEPE AAGRGVVAGC CCVCMARAKG AAFIPCGHTF CRACARELLA GRGRCPLCNA AIVDVLDIF
Best Arabidopsis Sequence Match ( AT3G25030.3 )
(BLAST)
001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKQEAS SVEGRIRLGA
101: VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN
201: TTILEVLDLF
Arabidopsis Description
At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.