Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d031586_P001 | Maize | cytosol | 23.8 | 45.6 |
TraesCS7B01G154600.1 | Wheat | nucleus | 21.09 | 38.4 |
TraesCS7A01G257600.1 | Wheat | nucleus | 20.88 | 37.74 |
TraesCS7D01G258600.1 | Wheat | nucleus | 20.25 | 36.6 |
OQU89743 | Sorghum | mitochondrion, nucleus, plastid | 15.24 | 35.1 |
HORVU7Hr1G053470.4 | Barley | cytosol, mitochondrion, plastid | 19.21 | 34.2 |
Bra015092.1-P | Field mustard | nucleus | 13.99 | 32.37 |
Solyc06g007880.1.1 | Tomato | nucleus | 11.69 | 30.11 |
CDY69745 | Canola | cytosol | 14.4 | 28.16 |
GSMUA_Achr5P25250_001 | Banana | cytosol | 15.87 | 28.15 |
PGSC0003DMT400003096 | Potato | nucleus | 11.69 | 28.0 |
CDX77379 | Canola | cytosol | 14.4 | 27.6 |
CDY24647 | Canola | nucleus | 12.11 | 27.23 |
Bra029623.1-P | Field mustard | nucleus | 12.11 | 27.1 |
AT3G25030.4 | Thale cress | cytosol | 13.36 | 25.6 |
Bra001236.1-P | Field mustard | nucleus | 11.69 | 25.34 |
KRH07558 | Soybean | nucleus | 13.78 | 25.19 |
VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 16.91 | 24.85 |
AT4G13100.2 | Thale cress | extracellular | 13.57 | 24.53 |
EES04107 | Sorghum | nucleus | 15.03 | 24.49 |
CDY05318 | Canola | nucleus | 10.65 | 24.06 |
KRH66042 | Soybean | nucleus | 12.73 | 22.34 |
CDX74062 | Canola | cytosol, nucleus, plastid | 15.66 | 22.19 |
AT3G07120.1 | Thale cress | nucleus | 14.61 | 19.44 |
Bra040362.1-P | Field mustard | nucleus | 13.78 | 19.08 |
Protein Annotations
Gene3D:3.30.40.10 | MapMan:35.2 | UniProt:A0A1Z5RBM3 | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlants:OQU80845 |
ProteinID:OQU80845 | ProteinID:OQU80845.1 | PFAM:PF13920 | ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR12183 |
PANTHER:PTHR12183:SF17 | SMART:SM00184 | EnsemblPlantsGene:SORBI_3007G196201 | SUPFAM:SSF57850 | UniParc:UPI000B8BAC59 | InterPro:Znf_RING |
InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr7:+:62804329..62806799
Molecular Weight (calculated)
49233.9 Da
IEP (calculated)
6.683
GRAVY (calculated)
-0.292
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: DHRTGRQAAA LGRFGSDVLR SSSWNKAGTR PRVSRTAQQT PPPPLPESLT DTGSSTARRT GGSAVRCGAP GRTHHSTRHA TADKRHPILP WQIRTPPRLA
101: PREPRCTARE PRGALITPSS AREIPQTRRT PPHTSPGAPL TFITSPHKRA CCCPSARPPI RIGASVPQQP LSGLQLPVSC ACVDVGEPAT CLASGGWRGG
201: VTLADQLAAV GPAPSVAVAG PGGAAAAGSC NLRDLLKLRD EDDLASAGRR AAVTLASAMA AERQVSAPSP SLSLSPPSSS SPATAAAAAA AAAARTLLDI
301: IRDDQPPASG PSSGDPFVRR AVSLPPPTTA TASPPAPTLA AAEAAPAPPP PPPAAAAADE EEQEQRVSLM ALLEQTDRQW SAVPGATTQP EEEEEEEEEE
401: DSAALEALEP VDDDAELEPE AAGRGVVAGC CCVCMARAKG AAFIPCGHTF CRACARELLA GRGRCPLCNA AIVDVLDIF
101: PREPRCTARE PRGALITPSS AREIPQTRRT PPHTSPGAPL TFITSPHKRA CCCPSARPPI RIGASVPQQP LSGLQLPVSC ACVDVGEPAT CLASGGWRGG
201: VTLADQLAAV GPAPSVAVAG PGGAAAAGSC NLRDLLKLRD EDDLASAGRR AAVTLASAMA AERQVSAPSP SLSLSPPSSS SPATAAAAAA AAAARTLLDI
301: IRDDQPPASG PSSGDPFVRR AVSLPPPTTA TASPPAPTLA AAEAAPAPPP PPPAAAAADE EEQEQRVSLM ALLEQTDRQW SAVPGATTQP EEEEEEEEEE
401: DSAALEALEP VDDDAELEPE AAGRGVVAGC CCVCMARAKG AAFIPCGHTF CRACARELLA GRGRCPLCNA AIVDVLDIF
001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKQEAS SVEGRIRLGA
101: VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN
201: TTILEVLDLF
101: VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN
201: TTILEVLDLF
Arabidopsis Description
At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.