CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, mitochondrion

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021038_P001	Maize	nucleus	68.75	77.72
Zm00001d006078_P001	Maize	nucleus	59.62	64.58
TraesCS5B01G282300.1	Wheat	cytosol, mitochondrion, nucleus	54.33	57.65
HORVU5Hr1G075810.1	Barley	mitochondrion, nucleus	52.4	57.37
TraesCS5A01G283800.1	Wheat	mitochondrion, nucleus, peroxisome	51.44	56.32
TraesCS5D01G291000.1	Wheat	cytosol, mitochondrion, nucleus	49.52	51.5
Os09t0505000-00	Rice	nucleus	47.12	45.79
GSMUA_Achr5P25250_001	Banana	cytosol	35.1	27.04
Solyc06g007880.1.1	Tomato	nucleus	24.04	26.88
Bra015092.1-P	Field mustard	nucleus	25.96	26.09
CDX77379	Canola	cytosol	30.29	25.2
CDY69745	Canola	cytosol	29.33	24.9
PGSC0003DMT400003096	Potato	nucleus	23.56	24.5
AT3G25030.4	Thale cress	cytosol	29.33	24.4
AT4G13100.2	Thale cress	extracellular	30.77	24.15
CDY05318	Canola	nucleus	24.52	24.06
CDY24647	Canola	nucleus	23.56	23.0
Bra029623.1-P	Field mustard	nucleus	23.08	22.43
Bra001236.1-P	Field mustard	nucleus	23.56	22.17
EES04107	Sorghum	nucleus	31.25	22.11
KRH07558	Soybean	nucleus	25.96	20.61
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	30.77	19.63
KRH66042	Soybean	nucleus	25.48	19.41
Bra040362.1-P	Field mustard	nucleus	29.33	17.63
CDX74062	Canola	cytosol, nucleus, plastid	26.44	16.27
OQU80845	Sorghum	mitochondrion	35.1	15.24
AT3G07120.1	Thale cress	nucleus	25.96	15.0

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:8054775	UniProt:A0A1W0W5X0	InterPro:IPR001841	InterPro:IPR013083
EnsemblPlants:OQU89743	ProteinID:OQU89743	ProteinID:OQU89743.1	PFAM:PF13920	ScanProsite:PS00518	PFscan:PS50089
PANTHER:PTHR12183	PANTHER:PTHR12183:SF21	SMART:SM00184	EnsemblPlantsGene:SORBI_3002G256601	SUPFAM:SSF57850	UniParc:UPI0001A83BFC
RefSeq:XP_002462623.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:64255169..64258774

Molecular Weight (calculated)

21921.3 Da

IEP (calculated)

11.193

GRAVY (calculated)

-0.504

Length

208 amino acids

Sequence
(BLAST)

001: MDVRVPPGSR PRPRPPTPRR GVTLAEQLAA SSNLRDLLKL RDDDVGSGGE GGEGRPAAAA RRRTLLDVIR DADEGRRPPA AASGRRVVRP APASAGVGGT
101: ATAAPASAAR RQSQRVSLMA LLERTEQQQW TWKRAGGAEE AAPLPEEEEK GKGGGVGGRC CVCVARGKGA AFIPCGHTFC RACARELRAG RGRCPLCNAT
201: IREVLNLF

Best Arabidopsis Sequence Match ( AT3G25030.3 )
(BLAST)

001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKQEAS SVEGRIRLGA
101: VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN
201: TTILEVLDLF

Arabidopsis Description

At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.