Factsheet for TraesCS5B01G282300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G283800.1	Wheat	mitochondrion, nucleus, peroxisome	80.61	83.16
HORVU5Hr1G075810.1	Barley	mitochondrion, nucleus	79.59	82.11
TraesCS5D01G291000.1	Wheat	cytosol, mitochondrion, nucleus	70.92	69.5
Zm00001d021038_P001	Maize	nucleus	57.14	60.87
OQU89743	Sorghum	mitochondrion, nucleus, plastid	57.65	54.33
Zm00001d006078_P001	Maize	nucleus	51.02	52.08
Os09t0505000-00	Rice	nucleus	52.04	47.66
TraesCS7B01G154600.1	Wheat	nucleus	44.9	33.46
Solyc06g007880.1.1	Tomato	nucleus	24.49	25.81
Bra015092.1-P	Field mustard	nucleus	27.04	25.6
GSMUA_Achr5P25250_001	Banana	cytosol	34.69	25.19
PGSC0003DMT400003096	Potato	nucleus	25.51	25.0
AT3G25030.4	Thale cress	cytosol	31.63	24.8
AT4G13100.2	Thale cress	extracellular	33.16	24.53
TraesCS3B01G459700.1	Wheat	cytosol, mitochondrion, nucleus	30.61	23.81
CDY69745	Canola	cytosol	29.59	23.67
CDX77379	Canola	cytosol	29.08	22.8
CDY24647	Canola	nucleus	22.96	21.13
Bra029623.1-P	Field mustard	nucleus	22.45	20.56
CDY05318	Canola	nucleus	21.94	20.28
KRH07558	Soybean	nucleus	27.04	20.23
KRH66042	Soybean	nucleus	27.55	19.78
Bra001236.1-P	Field mustard	nucleus	21.94	19.46
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	30.61	18.4
CDX74062	Canola	cytosol, nucleus, plastid	26.02	15.09
Bra040362.1-P	Field mustard	nucleus	26.02	14.74
AT3G07120.1	Thale cress	nucleus	26.02	14.17

Protein Annotations

EnsemblPlants:TraesCS5B01G282300.1	EnsemblPlantsGene:TraesCS5B01G282300	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR12183	PANTHER:PTHR12183:SF21	PFAM:PF13920	PFscan:PS50089
ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16449	MapMan:35.2

Description

No Description!

Coordinates

chr5B:-:467137757..467138603

Molecular Weight (calculated)

20453.3 Da

IEP (calculated)

8.415

GRAVY (calculated)

-0.350

Length

196 amino acids

Sequence
(BLAST)

001: MEGAPRVVPS RRGGVTLAEQ LAASSNLRDL LKLRDDDVQG EGDGARPARR RTLLDVIRGP EDDAAPPAPP SSTRAAEPAP TAAVAGAVPG AASPGQGEER
101: RVSLMALLEQ AERQWTTAAA RAGAWTRVDQ DAAAEGEEGS GRGVGGRCCV CMARRKGAAF VPCGHTFCRA CAREVRAGRG RCPLCNAAIR EVLNLF

Best Arabidopsis Sequence Match ( AT3G25030.3 )
(BLAST)

001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKQEAS SVEGRIRLGA
101: VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN
201: TTILEVLDLF

Arabidopsis Description

At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.