Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G075810.1 | Barley | mitochondrion, nucleus | 48.13 | 54.21 |
| TraesCS5D01G291000.1 | Wheat | cytosol, mitochondrion, nucleus | 50.0 | 53.5 |
| TraesCS5A01G283800.1 | Wheat | mitochondrion, nucleus, peroxisome | 46.73 | 52.63 |
| TraesCS5B01G282300.1 | Wheat | cytosol, mitochondrion, nucleus | 47.66 | 52.04 |
| Zm00001d021038_P001 | Maize | nucleus | 44.39 | 51.63 |
| OQU89743 | Sorghum | mitochondrion, nucleus, plastid | 45.79 | 47.12 |
| Zm00001d006078_P001 | Maize | nucleus | 42.06 | 46.88 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 32.24 | 25.56 |
| Bra015092.1-P | Field mustard | nucleus | 23.36 | 24.15 |
| AT3G25030.4 | Thale cress | cytosol | 27.57 | 23.6 |
| AT4G13100.2 | Thale cress | extracellular | 28.97 | 23.4 |
| PGSC0003DMT400003096 | Potato | nucleus | 21.5 | 23.0 |
| Solyc06g007880.1.1 | Tomato | nucleus | 19.63 | 22.58 |
| CDY69745 | Canola | cytosol | 25.7 | 22.45 |
| CDX77379 | Canola | cytosol | 25.7 | 22.0 |
| Os01t0917900-01 | Rice | nucleus | 31.31 | 21.41 |
| CDY05318 | Canola | nucleus | 20.09 | 20.28 |
| Bra001236.1-P | Field mustard | nucleus | 20.56 | 19.91 |
| CDY24647 | Canola | nucleus | 19.63 | 19.72 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 29.91 | 19.63 |
| KRH07558 | Soybean | nucleus | 23.83 | 19.47 |
| Bra029623.1-P | Field mustard | nucleus | 19.16 | 19.16 |
| KRH66042 | Soybean | nucleus | 22.43 | 17.58 |
| Bra040362.1-P | Field mustard | nucleus | 25.7 | 15.9 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 23.83 | 15.09 |
| AT3G07120.1 | Thale cress | nucleus | 21.96 | 13.06 |
Protein Annotations
| EnsemblPlants:Os09t0505000-00 | EnsemblPlantsGene:Os09g0505000 | EntrezGene:9267854 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF21 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:BAT08846.1 | RefSeq:XP_015611016.1 | ScanProsite:PS00518 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI0001C7AF0C | UniProt:A0A0P0XPH1 | MapMan:35.2 | : | : |
Description
Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0505000-00)
Coordinates
chr9:-:19519267..19520097
Molecular Weight (calculated)
22426.6 Da
IEP (calculated)
8.613
GRAVY (calculated)
-0.411
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MEARAMPPPT RTRRGVTLAE QMAASSNLRD LLKLRDNDDD DDDGGGQGGR RQPRPLPDAV VVAAGRRRTL LDVIRGVDDD DGHDHPPTGV LEGHRPATST
101: RTAAAGGARG GRVSLMALLE QAERQWTTAA AGDASRRRVA DDHAAAAEAG TNKGFAGAAA GVGGRCCVCM ARGKAAAFIP CGHTFCRACA RELRVGRGRC
201: PLCNAAIHDV LNLF
101: RTAAAGGARG GRVSLMALLE QAERQWTTAA AGDASRRRVA DDHAAAAEAG TNKGFAGAAA GVGGRCCVCM ARGKAAAFIP CGHTFCRACA RELRVGRGRC
201: PLCNAAIHDV LNLF
001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
Arabidopsis Description
At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.