Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029623.1-P | Field mustard | nucleus | 98.59 | 98.13 |
| CDY05318 | Canola | nucleus | 84.98 | 85.38 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 69.01 | 43.49 |
| GSMUA_Achr8P08650_001 | Banana | nucleus | 18.78 | 42.11 |
| AT3G07120.1 | Thale cress | nucleus | 70.89 | 41.94 |
| HORVU4Hr1G069780.1 | Barley | nucleus | 23.47 | 29.76 |
| Zm00001d021038_P001 | Maize | nucleus | 24.41 | 28.26 |
| HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 22.54 | 26.97 |
| HORVU5Hr1G123180.1 | Barley | cytosol, nucleus | 23.0 | 25.79 |
| Zm00001d006078_P001 | Maize | nucleus | 22.54 | 25.0 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 37.56 | 24.54 |
| HORVU5Hr1G075810.1 | Barley | mitochondrion, nucleus | 21.6 | 24.21 |
| KRH46683 | Soybean | nucleus | 39.91 | 23.94 |
| TraesCS5A01G283800.1 | Wheat | mitochondrion, nucleus, peroxisome | 21.13 | 23.68 |
| OQU89743 | Sorghum | mitochondrion, nucleus, plastid | 23.0 | 23.56 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 29.11 | 23.22 |
| TraesCS5D01G291000.1 | Wheat | cytosol, mitochondrion, nucleus | 21.6 | 23.0 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 25.35 | 22.98 |
| TraesCS5B01G282300.1 | Wheat | cytosol, mitochondrion, nucleus | 21.13 | 22.96 |
| KRG99707 | Soybean | nucleus | 37.56 | 22.41 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 28.17 | 22.22 |
| EES04107 | Sorghum | nucleus | 30.05 | 21.77 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.76 | 21.43 |
| CDX77379 | Canola | cytosol | 24.88 | 21.2 |
| Zm00001d042359_P001 | Maize | cytosol, mitochondrion, nucleus | 30.05 | 20.91 |
| TraesCS3A01G423800.1 | Wheat | cytosol | 24.41 | 20.39 |
| TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 23.0 | 19.68 |
| Os09t0505000-00 | Rice | nucleus | 19.72 | 19.63 |
| Zm00001d031586_P001 | Maize | cytosol | 23.0 | 19.6 |
| Os01t0917900-01 | Rice | nucleus | 28.64 | 19.49 |
| TraesCS7B01G154600.1 | Wheat | nucleus | 23.94 | 19.39 |
| TraesCS7A01G257600.1 | Wheat | nucleus | 23.94 | 19.25 |
| CDY69745 | Canola | cytosol | 22.07 | 19.18 |
| TraesCS7D01G258600.1 | Wheat | nucleus | 23.47 | 18.87 |
| TraesCS3B01G459700.1 | Wheat | cytosol, mitochondrion, nucleus | 22.07 | 18.65 |
| Zm00001d012045_P001 | Maize | cytosol, mitochondrion, nucleus | 25.82 | 18.39 |
| HORVU3Hr1G093580.1 | Barley | plastid | 22.54 | 17.33 |
| TraesCS3D01G259900.1 | Wheat | nucleus | 20.19 | 15.87 |
| HORVU7Hr1G053470.4 | Barley | cytosol, mitochondrion, plastid | 19.72 | 15.61 |
| TraesCS3A01G259800.1 | Wheat | nucleus | 19.72 | 15.38 |
| HORVU3Hr1G064710.1 | Barley | cytosol | 20.19 | 12.54 |
| OQU80845 | Sorghum | mitochondrion | 27.23 | 12.11 |
| CDY21289 | Canola | nucleus | 7.98 | 8.42 |
| CDX82926 | Canola | nucleus | 7.51 | 7.96 |
| CDX79140 | Canola | cytosol | 7.51 | 7.69 |
| CDX98736 | Canola | nucleus | 7.04 | 7.46 |
| CDY32036 | Canola | cytosol | 6.57 | 6.64 |
| CDY08650 | Canola | cytosol | 6.57 | 6.64 |
| CDX90849 | Canola | nucleus | 6.1 | 6.44 |
Protein Annotations
| EnsemblPlants:CDY24647 | EnsemblPlantsGene:GSBRNA2T00027022001 | Gene3D:3.30.40.10 | GO:A0A078GHK8 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:CDY24647 | ProteinID:CDY24647.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EDD90A | UniProt:A0A078GHK8 | MapMan:35.2 | : | : | : |
Description
BnaA05g30460DBnaA05g30460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHK8]
Coordinates
chrLK032162:-:114973..115614
Molecular Weight (calculated)
23654.9 Da
IEP (calculated)
3.995
GRAVY (calculated)
-0.877
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDPPGSSGR GMFTRGSSMR VGSSKNPDDL PDVSIPGDGP PSRSFKPQFS RHDSVRDHGD GEDDRILRHP VVKFEDERQM SAREAVAAQE AAEADEEDDE
101: NDDDSEEEAE EKSSAPKQTM SLMDLLEETD RQMGLTGARY AMDEEEEDEE DEDEEEEEGE GELSCCVCHV YIKGATFAPC GHTFCKLCSK ELMAQKGHCP
201: VCISFVLEFL EIF
101: NDDDSEEEAE EKSSAPKQTM SLMDLLEETD RQMGLTGARY AMDEEEEDEE DEDEEEEEGE GELSCCVCHV YIKGATFAPC GHTFCKLCSK ELMAQKGHCP
201: VCISFVLEFL EIF
001: MSALKSRSNS LAGLSLDAVL GGEILIEPPS LPSPPPLPSK SLVPHRPTSQ TLFDIIREEY AKEGHKDRTT WQIFREKLRL KRTGSAWTSS LHIPASDILI
101: PNPKHIGTAF RSHSAGLNIR DLVHAIPMSD PPGSSGRAMF TRGSSMRVGS SKNPDDSPDI SVLEDGPPSR SFKPQLSRHD SVRDHSEGEE NNRRRHPIVT
201: FVEERQMSAR EAVAAQEAAE AEAAAAGGSE DEDDDDEEDD SGETEEMKSS SASEPKQTMS LMDLLEETDR QMGLTGSRYA MDEDEEYEED EEDENNEEEG
301: DSHGGGEGEL SCCVCMVKIK GASFTPCGHT FCKLCSKELM AQKGHCPVCS SFVLEFLEIF
101: PNPKHIGTAF RSHSAGLNIR DLVHAIPMSD PPGSSGRAMF TRGSSMRVGS SKNPDDSPDI SVLEDGPPSR SFKPQLSRHD SVRDHSEGEE NNRRRHPIVT
201: FVEERQMSAR EAVAAQEAAE AEAAAAGGSE DEDDDDEEDD SGETEEMKSS SASEPKQTMS LMDLLEETDR QMGLTGSRYA MDEDEEYEED EEDENNEEEG
301: DSHGGGEGEL SCCVCMVKIK GASFTPCGHT FCKLCSKELM AQKGHCPVCS SFVLEFLEIF
Arabidopsis Description
At3g07120 [Source:UniProtKB/TrEMBL;Acc:Q9SFU2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.