Factsheet for TraesCS3B01G459700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G419000.1	Wheat	cytosol, mitochondrion, nucleus	79.76	80.72
HORVU3Hr1G093580.1	Barley	plastid	66.27	60.29
TraesCS3A01G423800.1	Wheat	cytosol	59.13	58.43
HORVU4Hr1G069780.1	Barley	nucleus	33.33	50.0
HORVU1Hr1G049430.2	Barley	cytosol, nucleus, plastid	33.33	47.19
HORVU5Hr1G123180.1	Barley	cytosol, nucleus	34.52	45.79
Os01t0917900-01	Rice	nucleus	44.44	35.78
EES04107	Sorghum	nucleus	41.27	35.37
Zm00001d012045_P001	Maize	cytosol, mitochondrion, nucleus	40.48	34.11
TraesCS5B01G282300.1	Wheat	cytosol, mitochondrion, nucleus	23.81	30.61
Bra015092.1-P	Field mustard	nucleus	25.0	30.43
GSMUA_Achr8P00880_001	Banana	nucleus	32.14	30.34
Zm00001d042359_P001	Maize	cytosol, mitochondrion, nucleus	35.32	29.09
Solyc06g007880.1.1	Tomato	nucleus	20.63	27.96
CDY69745	Canola	cytosol	26.59	27.35
CDX77379	Canola	cytosol	26.98	27.2
AT3G25030.4	Thale cress	cytosol	25.79	26.0
PGSC0003DMT400003096	Potato	nucleus	20.24	25.5
KRH07558	Soybean	nucleus	25.79	24.81
TraesCS7B01G154600.1	Wheat	nucleus	25.79	24.71
Bra001236.1-P	Field mustard	nucleus	20.63	23.53
AT4G13100.2	Thale cress	extracellular	24.21	23.02
KRH66042	Soybean	nucleus	24.6	22.71
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	29.37	22.7
CDY24647	Canola	nucleus	18.65	22.07
Bra029623.1-P	Field mustard	nucleus	18.65	21.96
CDY05318	Canola	nucleus	17.46	20.75
CDX74062	Canola	cytosol, nucleus, plastid	26.19	19.53
Bra040362.1-P	Field mustard	nucleus	25.4	18.5
AT3G07120.1	Thale cress	nucleus	25.0	17.5

Protein Annotations

EnsemblPlants:TraesCS3B01G459700.1	EnsemblPlantsGene:TraesCS3B01G459700	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12183	PANTHER:PTHR12183:SF21	PFAM:PF13920	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16449	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr3B:-:703296438..703297196

Molecular Weight (calculated)

27627.7 Da

IEP (calculated)

4.364

GRAVY (calculated)

-0.751

Length

252 amino acids

Sequence
(BLAST)

001: MDRRPELQRA MTLKEQLSTP AEPAIRDFLR IPDDDDDGGG GTEDRPCTLM DAIDRDVRGE GGAGGAINWK PLRHRLWLRR AAGAWHAAGS ETAAANRAVP
101: RSRSKCNYTS GEASATFSRA PSLRAVVDDE DGSDVEEEAE DNDLPPPAAA STSLITLMEQ ADGHWDETGE DGGESRCGSV EDNDEDGQGE RREEDEEEEE
201: AQVCCVCMAR HKGAAFIPCG HTFCRLCSRE LRHTRGNCPL CNVFIQDILH IF

Best Arabidopsis Sequence Match ( AT4G13100.1 )
(BLAST)

001: MIQMDGGDRL RVTLLDRMST VENGRSSVTL EDILMAETSS FRSLTTPTTP VRNHSSSSLL DVMRRERRRD KTAWKSLRDK LRLKRTATGW ISSNPIPTLD
101: NHILTPDNDS HRFNRLGFLL TNSETNRSSR DVSDAAEEAA EREGRLRLGT VLAAEREEMQ PPRMSLMELL EDNDGHMYEL SARDEVEVEG RDGCDGGGEA
201: VAVTGAAELG CCVCMVRSKG AAFIPCGHTF CRLCSRELWV QRGNCPLCNT AILQVLDIF

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JS86]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.