CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012045_P001	Maize	cytosol, mitochondrion, nucleus	71.77	70.57
Os01t0917900-01	Rice	nucleus	62.93	59.11
TraesCS3D01G419000.1	Wheat	cytosol, mitochondrion, nucleus	37.07	43.78
TraesCS3D01G259900.1	Wheat	nucleus	39.12	42.44
TraesCS3A01G259800.1	Wheat	nucleus	38.44	41.39
TraesCS3B01G459700.1	Wheat	cytosol, mitochondrion, nucleus	35.37	41.27
HORVU3Hr1G093580.1	Barley	plastid	37.07	39.35
TraesCS3A01G423800.1	Wheat	cytosol	34.01	39.22
HORVU1Hr1G049430.2	Barley	cytosol, nucleus, plastid	22.79	37.64
HORVU4Hr1G069780.1	Barley	nucleus	21.43	37.5
HORVU5Hr1G123180.1	Barley	cytosol, nucleus	23.81	36.84
HORVU3Hr1G064710.1	Barley	cytosol	41.84	35.86
PGSC0003DMT400003096	Potato	nucleus	24.15	35.5
Solyc06g007880.1.1	Tomato	nucleus	21.43	33.87
OQU89743	Sorghum	mitochondrion, nucleus, plastid	22.11	31.25
GSMUA_Achr8P00880_001	Banana	nucleus	27.89	30.71
Bra015092.1-P	Field mustard	nucleus	21.43	30.43
CDY24647	Canola	nucleus	21.77	30.05
Bra029623.1-P	Field mustard	nucleus	21.77	29.91
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	32.99	29.75
CDY05318	Canola	nucleus	21.09	29.25
Bra001236.1-P	Field mustard	nucleus	21.77	28.96
CDX77379	Canola	cytosol	23.81	28.0
AT4G13100.2	Thale cress	extracellular	24.49	27.17
CDY69745	Canola	cytosol	22.45	26.94
AT3G25030.4	Thale cress	cytosol	21.77	25.6
Bra040362.1-P	Field mustard	nucleus	28.91	24.57
KRH07558	Soybean	nucleus	21.77	24.43
CDX74062	Canola	cytosol, nucleus, plastid	27.21	23.67
KRH66042	Soybean	nucleus	21.09	22.71
AT3G07120.1	Thale cress	nucleus	26.19	21.39
OQU80845	Sorghum	mitochondrion	24.49	15.03

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:8059358	UniProt:C5XG86	EnsemblPlants:EES04107	ProteinID:EES04107
ProteinID:EES04107.1	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR12183
PANTHER:PTHR12183:SF20	SMART:SM00184	EnsemblPlantsGene:SORBI_3003G402400	SUPFAM:SSF57850	unigene:Sbi.9945	UniParc:UPI0001A8554C
RefSeq:XP_002458987.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:71063165..71064828

Molecular Weight (calculated)

32222.7 Da

IEP (calculated)

4.385

GRAVY (calculated)

-0.952

Length

294 amino acids

Sequence
(BLAST)

001: MDGRRPEMRR TMTLSEQLST PDPAIRDFLK IPHDADVGEG NSTSVGGGSD RTTGWKPLRD RLRLRRAVGA WQKPKPGAAA AHARTNSGDV GNISSANNRS
101: NKYNYSPGEA AAAFSRTFSR APSLRAPSLK STPTFSRVAS TRVGPASGSR SSSRRPATQD FRDVDGEDEE DDDEEEEEDD DEEEEEKEEA PAAQMSLMAL
201: LGQTDDSQWD DDEDEEDGGG GARKKGEGDD DEDDGEGREE EMVHVCCVCM VRHKGAAFIP CGHTFCRLCS RELWVSRGNC PLCNGFIQEI LDIF

Best Arabidopsis Sequence Match ( AT3G25030.2 )
(BLAST)

001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF

Arabidopsis Description

At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.