Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77379 | Canola | cytosol | 72.95 | 60.4 |
| GSMUA_Achr8P08650_001 | Banana | nucleus | 25.6 | 55.79 |
| CDY69745 | Canola | cytosol | 64.25 | 54.29 |
| AT3G25030.4 | Thale cress | cytosol | 57.97 | 48.0 |
| AT4G13100.2 | Thale cress | extracellular | 45.89 | 35.85 |
| HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 28.02 | 32.58 |
| HORVU4Hr1G069780.1 | Barley | nucleus | 26.09 | 32.14 |
| HORVU5Hr1G123180.1 | Barley | cytosol, nucleus | 28.5 | 31.05 |
| Zm00001d021038_P001 | Maize | nucleus | 26.09 | 29.35 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 37.2 | 28.84 |
| Solyc09g059990.1.1 | Tomato | nucleus | 34.3 | 28.74 |
| TraesCS5A01G283800.1 | Wheat | mitochondrion, nucleus, peroxisome | 26.09 | 28.42 |
| Zm00001d006078_P001 | Maize | nucleus | 25.6 | 27.6 |
| TraesCS5B01G282300.1 | Wheat | cytosol, mitochondrion, nucleus | 25.6 | 27.04 |
| HORVU5Hr1G075810.1 | Barley | mitochondrion, nucleus | 24.64 | 26.84 |
| PGSC0003DMT400077589 | Potato | nucleus | 32.85 | 26.67 |
| TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 31.88 | 26.51 |
| TraesCS5D01G291000.1 | Wheat | cytosol, mitochondrion, nucleus | 25.12 | 26.0 |
| OQU89743 | Sorghum | mitochondrion, nucleus, plastid | 26.09 | 25.96 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 29.47 | 25.96 |
| TraesCS3B01G459700.1 | Wheat | cytosol, mitochondrion, nucleus | 30.43 | 25.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.88 | 24.81 |
| Zm00001d031586_P001 | Maize | cytosol | 28.99 | 24.0 |
| Bra001236.1-P | Field mustard | nucleus | 25.6 | 23.98 |
| TraesCS7B01G154600.1 | Wheat | nucleus | 29.95 | 23.57 |
| Os09t0505000-00 | Rice | nucleus | 24.15 | 23.36 |
| Bra029623.1-P | Field mustard | nucleus | 24.15 | 23.36 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 29.95 | 22.96 |
| HORVU3Hr1G093580.1 | Barley | plastid | 29.95 | 22.38 |
| TraesCS7A01G257600.1 | Wheat | nucleus | 28.5 | 22.26 |
| TraesCS7D01G258600.1 | Wheat | nucleus | 28.5 | 22.26 |
| Zm00001d042359_P001 | Maize | cytosol, mitochondrion, nucleus | 32.37 | 21.9 |
| Zm00001d012045_P001 | Maize | cytosol, mitochondrion, nucleus | 31.4 | 21.74 |
| TraesCS3A01G423800.1 | Wheat | cytosol | 26.57 | 21.57 |
| EES04107 | Sorghum | nucleus | 30.43 | 21.43 |
| Os01t0917900-01 | Rice | nucleus | 31.88 | 21.09 |
| HORVU7Hr1G053470.4 | Barley | cytosol, mitochondrion, plastid | 26.09 | 20.07 |
| Bra040362.1-P | Field mustard | nucleus | 29.47 | 17.63 |
| Bra019391.1-P | Field mustard | nucleus | 14.49 | 15.23 |
| OQU80845 | Sorghum | mitochondrion | 32.37 | 13.99 |
| TraesCS3A01G259800.1 | Wheat | nucleus | 17.39 | 13.19 |
| Bra000784.1-P | Field mustard | nucleus | 12.56 | 12.87 |
| TraesCS3D01G259900.1 | Wheat | nucleus | 16.43 | 12.55 |
| Bra034501.1-P | Field mustard | cytosol | 12.56 | 12.32 |
| Bra013603.1-P | Field mustard | cytosol | 12.08 | 12.32 |
| HORVU3Hr1G064710.1 | Barley | cytosol | 15.94 | 9.62 |
Protein Annotations
| EnsemblPlants:Bra015092.1 | EnsemblPlants:Bra015092.1-P | EnsemblPlantsGene:Bra015092 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002540BF8 | UniProt:M4DF20 | MapMan:35.2 |
Description
AT4G13100 (E=1e-050) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA07:-:3543658..3544281
Molecular Weight (calculated)
22684.7 Da
IEP (calculated)
4.984
GRAVY (calculated)
-0.497
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MQREHRHDYS SHRDKTAWKS LREKLRLKRN ATVWISSNPI PSLNTPVLNR DNDSHQLGSL LSNSRNEGGQ SQPESASSGG VTADGRLQLG AVLAEERALS
101: AREEETPPVT ADMQPARMSL MELLDENEGQ MSLVGVGGDG EEEERGVVEE TAAAAEISCC VCMVRSKGAA FIPCGHTFCR LCSRELWVQR GNCPLCNTSI
201: SEILDLF
101: AREEETPPVT ADMQPARMSL MELLDENEGQ MSLVGVGGDG EEEERGVVEE TAAAAEISCC VCMVRSKGAA FIPCGHTFCR LCSRELWVQR GNCPLCNTSI
201: SEILDLF
001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
Arabidopsis Description
At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.