Factsheet for Zm00001d021038_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89743	Sorghum	mitochondrion, nucleus, plastid	77.72	68.75
Zm00001d006078_P001	Maize	nucleus	66.3	63.54
HORVU5Hr1G075810.1	Barley	mitochondrion, nucleus	59.24	57.37
TraesCS5B01G282300.1	Wheat	cytosol, mitochondrion, nucleus	60.87	57.14
TraesCS5A01G283800.1	Wheat	mitochondrion, nucleus, peroxisome	54.35	52.63
TraesCS5D01G291000.1	Wheat	cytosol, mitochondrion, nucleus	55.98	51.5
Os09t0505000-00	Rice	nucleus	51.63	44.39
Zm00001d031586_P001	Maize	cytosol	45.65	33.6
GSMUA_Achr5P25250_001	Banana	cytosol	39.67	27.04
Solyc06g007880.1.1	Tomato	nucleus	27.17	26.88
Bra015092.1-P	Field mustard	nucleus	29.35	26.09
CDX77379	Canola	cytosol	34.24	25.2
CDY05318	Canola	nucleus	28.26	24.53
CDY24647	Canola	nucleus	28.26	24.41
AT3G25030.4	Thale cress	cytosol	33.15	24.4
CDY69745	Canola	cytosol	32.07	24.08
Bra029623.1-P	Field mustard	nucleus	27.72	23.83
AT4G13100.2	Thale cress	extracellular	34.24	23.77
PGSC0003DMT400003096	Potato	nucleus	25.0	23.0
Bra001236.1-P	Field mustard	nucleus	26.63	22.17
Zm00001d042359_P001	Maize	cytosol, mitochondrion, nucleus	36.41	21.9
Zm00001d012045_P001	Maize	cytosol, mitochondrion, nucleus	35.33	21.74
KRH07558	Soybean	nucleus	29.35	20.61
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	35.87	20.25
KRH66042	Soybean	nucleus	28.8	19.41
Bra040362.1-P	Field mustard	nucleus	32.61	17.34
CDX74062	Canola	cytosol, nucleus, plastid	29.89	16.27
AT3G07120.1	Thale cress	nucleus	29.89	15.28

Protein Annotations

EnsemblPlants:Zm00001d021038_P001	EnsemblPlants:Zm00001d021038_T001	EnsemblPlantsGene:Zm00001d021038	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR12183	PANTHER:PTHR12183:SF21	PFAM:PF13920
PFscan:PS50089	ProteinID:ONM56196.1	ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0008453695	UniProt:A0A1D6I824	MapMan:35.2	:	:	:

Description

RING/U-box superfamily protein

Coordinates

chr7:-:141028674..141029228

Molecular Weight (calculated)

19526.4 Da

IEP (calculated)

10.219

GRAVY (calculated)

-0.509

Length

184 amino acids

Sequence
(BLAST)

001: MDVRVPPPRR GVTLAEQLAA SSNLRNLLKL RDDGGEGGGR PAAAGRRRTL LDAIRDADEG RRPPAVASGR HSVRPAPGGT ATAAPGSAAR GASQRVSLMA
101: LLERTEQQWT WKRADAEEAA PEEEEKEKGG GMGGRCCVCV ARGKGAAFIP CGHTFCRACA RELRTGRGRC PLCNATIREV LNLF

Best Arabidopsis Sequence Match ( AT3G25030.2 )
(BLAST)

001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF

Arabidopsis Description

At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.