Factsheet for TraesCS5A01G283800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus

Predictor Summary:

mitochondrion 2
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, peroxisome
Any Predictor:	mitochondrion, nucleus, peroxisome
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G282300.1	Wheat	cytosol, mitochondrion, nucleus	83.16	80.61
HORVU5Hr1G075810.1	Barley	mitochondrion, nucleus	78.95	78.95
TraesCS5D01G291000.1	Wheat	cytosol, mitochondrion, nucleus	69.47	66.0
Zm00001d021038_P001	Maize	nucleus	52.63	54.35
OQU89743	Sorghum	mitochondrion, nucleus, plastid	56.32	51.44
Zm00001d006078_P001	Maize	nucleus	51.05	50.52
Os09t0505000-00	Rice	nucleus	52.63	46.73
TraesCS7A01G257600.1	Wheat	nucleus	47.89	34.34
Solyc06g007880.1.1	Tomato	nucleus	25.79	26.34
GSMUA_Achr5P25250_001	Banana	cytosol	37.37	26.3
Bra015092.1-P	Field mustard	nucleus	28.42	26.09
AT3G25030.4	Thale cress	cytosol	33.16	25.2
AT4G13100.2	Thale cress	extracellular	34.21	24.53
PGSC0003DMT400003096	Potato	nucleus	25.26	24.0
CDY69745	Canola	cytosol	30.53	23.67
CDX77379	Canola	cytosol	30.53	23.2
TraesCS3A01G423800.1	Wheat	cytosol	30.0	22.35
CDY24647	Canola	nucleus	23.68	21.13
Bra029623.1-P	Field mustard	nucleus	23.16	20.56
CDY05318	Canola	nucleus	22.11	19.81
KRH07558	Soybean	nucleus	26.32	19.08
Bra001236.1-P	Field mustard	nucleus	22.11	19.0
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	32.11	18.71
KRH66042	Soybean	nucleus	26.84	18.68
CDX74062	Canola	cytosol, nucleus, plastid	26.32	14.79
Bra040362.1-P	Field mustard	nucleus	26.84	14.74
TraesCS3A01G259800.1	Wheat	nucleus	20.0	13.92
AT3G07120.1	Thale cress	nucleus	26.32	13.89

Protein Annotations

EnsemblPlants:TraesCS5A01G283800.1	EnsemblPlantsGene:TraesCS5A01G283800	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR12183	PANTHER:PTHR12183:SF21	PFAM:PF13920	PFscan:PS50089
ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16449	MapMan:35.2

Description

No Description!

Coordinates

chr5A:+:491742606..491743178

Molecular Weight (calculated)

19891.6 Da

IEP (calculated)

8.415

GRAVY (calculated)

-0.351

Length

190 amino acids

Sequence
(BLAST)

001: MEGAPRAVPS RRGGVTLAEQ LAASSNLRDL LKLRDDDGEG DGARPARRRT LLDVIRGPED DAAPPSSTRA AEPAVTVAGA LPGAASPGQG EERRVSLMAL
101: LEQAERQWTT AAARAGAWTR VDQEAAAEEG EAGSGRGVGG RCCVCMARRK GAAFVPCGHT FCRACAREVR AGRGRCPLCN AAIREVLNLF

Best Arabidopsis Sequence Match ( AT3G25030.3 )
(BLAST)

001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKQEAS SVEGRIRLGA
101: VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN
201: TTILEVLDLF

Arabidopsis Description

At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.