Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69745 | Canola | cytosol | 78.8 | 80.41 |
| Bra015092.1-P | Field mustard | nucleus | 60.4 | 72.95 |
| AT3G25030.4 | Thale cress | cytosol | 60.8 | 60.8 |
| GSMUA_Achr8P08650_001 | Banana | nucleus | 21.2 | 55.79 |
| AT4G13100.2 | Thale cress | extracellular | 45.2 | 42.64 |
| Solyc09g059990.1.1 | Tomato | nucleus | 35.2 | 35.63 |
| Zm00001d021038_P001 | Maize | nucleus | 25.2 | 34.24 |
| PGSC0003DMT400077589 | Potato | nucleus | 34.4 | 33.73 |
| HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 24.0 | 33.71 |
| HORVU4Hr1G069780.1 | Barley | nucleus | 21.6 | 32.14 |
| HORVU5Hr1G123180.1 | Barley | cytosol, nucleus | 24.0 | 31.58 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 33.2 | 31.09 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.8 | 30.83 |
| TraesCS5A01G283800.1 | Wheat | mitochondrion, nucleus, peroxisome | 23.2 | 30.53 |
| OQU89743 | Sorghum | mitochondrion, nucleus, plastid | 25.2 | 30.29 |
| TraesCS5D01G291000.1 | Wheat | cytosol, mitochondrion, nucleus | 23.6 | 29.5 |
| HORVU5Hr1G075810.1 | Barley | mitochondrion, nucleus | 22.4 | 29.47 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 27.6 | 29.36 |
| Zm00001d006078_P001 | Maize | nucleus | 22.4 | 29.17 |
| TraesCS5B01G282300.1 | Wheat | cytosol, mitochondrion, nucleus | 22.8 | 29.08 |
| TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 28.8 | 28.92 |
| TraesCS3B01G459700.1 | Wheat | cytosol, mitochondrion, nucleus | 27.2 | 26.98 |
| CDY05318 | Canola | nucleus | 22.4 | 26.42 |
| HORVU3Hr1G093580.1 | Barley | plastid | 29.2 | 26.35 |
| Zm00001d031586_P001 | Maize | cytosol | 26.0 | 26.0 |
| Os09t0505000-00 | Rice | nucleus | 22.0 | 25.7 |
| TraesCS3A01G423800.1 | Wheat | cytosol | 26.0 | 25.49 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 27.2 | 25.19 |
| CDY24647 | Canola | nucleus | 21.2 | 24.88 |
| TraesCS7B01G154600.1 | Wheat | nucleus | 26.0 | 24.71 |
| Os01t0917900-01 | Rice | nucleus | 30.8 | 24.6 |
| Zm00001d042359_P001 | Maize | cytosol, mitochondrion, nucleus | 29.6 | 24.18 |
| Zm00001d012045_P001 | Maize | cytosol, mitochondrion, nucleus | 28.8 | 24.08 |
| EES04107 | Sorghum | nucleus | 28.0 | 23.81 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 32.0 | 23.67 |
| TraesCS7D01G258600.1 | Wheat | nucleus | 24.8 | 23.4 |
| TraesCS7A01G257600.1 | Wheat | nucleus | 24.8 | 23.4 |
| HORVU7Hr1G053470.4 | Barley | cytosol, mitochondrion, plastid | 24.0 | 22.3 |
| TraesCS3A01G259800.1 | Wheat | nucleus | 17.2 | 15.75 |
| CDY21289 | Canola | nucleus | 12.4 | 15.35 |
| TraesCS3D01G259900.1 | Wheat | nucleus | 16.4 | 15.13 |
| CDX82926 | Canola | nucleus | 12.0 | 14.93 |
| CDX90849 | Canola | nucleus | 12.0 | 14.85 |
| OQU80845 | Sorghum | mitochondrion | 27.6 | 14.4 |
| CDX79140 | Canola | cytosol | 11.2 | 13.46 |
| CDX98736 | Canola | nucleus | 10.8 | 13.43 |
| CDY32036 | Canola | cytosol | 11.2 | 13.27 |
| CDY08650 | Canola | cytosol | 10.8 | 12.8 |
| HORVU3Hr1G064710.1 | Barley | cytosol | 16.8 | 12.24 |
Protein Annotations
| EnsemblPlants:CDX77379 | EnsemblPlantsGene:GSBRNA2T00128205001 | Gene3D:3.30.40.10 | GO:A0A078CMX5 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 | PFscan:PS50089 |
| ProteinID:CDX77379 | ProteinID:CDX77379.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EF2901 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA07g05170D
Coordinates
chrLK031811:-:72732..74267
Molecular Weight (calculated)
27527.7 Da
IEP (calculated)
5.190
GRAVY (calculated)
-0.523
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQMDGGDRL RVTLLDCMET GRSSLPGLTL EAILMADRNG TPPQPLPSRN QSNRTLLDVM QREHRHDYSS HRDKTAWKSL REKLRLKRNA TVWISSNPIP
101: SLNTPVLNRD NDSHQLGSLL SNSRNEGGQS QPESASSGGR ALSAREEETP PVTADMQPAR MSLMELLDEN EGQMSLVGVG GDGEEEERGV VEETAAAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TSISEILDLF
101: SLNTPVLNRD NDSHQLGSLL SNSRNEGGQS QPESASSGGR ALSAREEETP PVTADMQPAR MSLMELLDEN EGQMSLVGVG GDGEEEERGV VEETAAAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TSISEILDLF
001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
Arabidopsis Description
At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.