CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034501.1-P	Field mustard	cytosol	99.05	99.05
CDY08650	Canola	cytosol	95.26	95.26
AT1G62370.1	Thale cress	cytosol	57.35	59.31
KRH36518	Soybean	mitochondrion	35.07	37.76
CDX90849	Canola	nucleus	35.55	37.13
GSMUA_Achr1P18240_001	Banana	nucleus	30.33	36.36
KRH11501	Soybean	cytosol, mitochondrion, nucleus, plastid	36.02	36.36
CDY21289	Canola	nucleus	34.6	36.14
GSMUA_Achr3P12970_001	Banana	cytosol	29.38	35.84
CDX82926	Canola	nucleus	33.65	35.32
CDX79140	Canola	cytosol	33.18	33.65
CDX98736	Canola	nucleus	31.75	33.33
CDY69745	Canola	cytosol	13.74	11.84
CDX77379	Canola	cytosol	13.27	11.2
CDX74062	Canola	cytosol, nucleus, plastid	10.9	6.8
CDY05318	Canola	nucleus	6.64	6.6
CDY24647	Canola	nucleus	6.64	6.57

Protein Annotations

EnsemblPlants:CDY32036	EnsemblPlantsGene:GSBRNA2T00051308001	Gene3D:3.30.40.10	GO:A0A078H2N6	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12183	PANTHER:PTHR12183:SF35	PFAM:PF13920	PFscan:PS50089
ProteinID:CDY32036	ProteinID:CDY32036.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EE7E6D
UniProt:A0A078H2N6	MapMan:35.2	:	:	:	:

Description

BnaA03g60400DBnaA03g60400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2N6]

Coordinates

chrLK032285:+:119425..120275

Molecular Weight (calculated)

23270.5 Da

IEP (calculated)

4.258

GRAVY (calculated)

-0.420

Length

211 amino acids

Sequence
(BLAST)

001: MSQLGDLLRE SADETGSGRT MMLGLLEEDR IDGEDRATSK WSTLKQRLRF DWIGCCGGPT LLRLRGSEAP VAEEDEDDEE EEEHSGQNRV IDLSNSVPDP
101: GLVAETECLT RGTRNLAEAL AEERLARGEN VTEASVAKVP LMKLLAETEG CDATTWTGAD PLCCVCMGRE KGAAFIPCGH TYCRMCSREI WMNRGSCPLC
201: NRSIFDVLDL Y

Best Arabidopsis Sequence Match ( AT1G62370.1 )
(BLAST)

001: MSQLGDLLRE SEDGTRSERT MMMSLLEEDQ INGGDRTMSK WTTLKQRLRF DWVGCCGKPL TLRLRQAETP IVVDDDDDEE ESQNQVVDFS DPGTGTELDC
101: LTRGSTRNLA EALAEERLAH VTEEETAVTK VPLMRLLAES DGCDSTTTWL GNDPLCCVCM GREKGAAFIP CGHTYCRVCS REIWMNRGTC PLCNRSIFDV
201: LDLY

Arabidopsis Description

F2401.10 [Source:UniProtKB/TrEMBL;Acc:O48801]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.