CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11501	Soybean	cytosol, mitochondrion, nucleus, plastid	78.57	73.68
KRH02010	Soybean	cytosol	63.78	63.13
KRH51146	Soybean	cytosol	60.71	57.49
Solyc02g081180.1.1	Tomato	nucleus	47.96	46.31
PGSC0003DMT400043086	Potato	nucleus	48.98	46.15
GSMUA_Achr1P18240_001	Banana	nucleus	41.33	46.02
GSMUA_Achr3P12970_001	Banana	cytosol	40.31	45.66
Solyc03g031830.1.1	Tomato	nucleus	49.49	39.59
PGSC0003DMT400061842	Potato	mitochondrion	46.43	37.76
AT1G62370.1	Thale cress	cytosol	39.29	37.75
Bra034501.1-P	Field mustard	cytosol	38.27	35.55
CDY32036	Canola	cytosol	37.76	35.07
CDY08650	Canola	cytosol	37.76	35.07
KRH07558	Soybean	nucleus	12.76	9.54
KRH66042	Soybean	nucleus	12.24	8.79
KRG99707	Soybean	nucleus	11.22	6.16
KRH46683	Soybean	nucleus	10.2	5.63

Protein Annotations

EMBL:ACUP02005379	EnsemblPlants:KRH36518	EnsemblPlantsGene:GLYMA_09G008200	EntrezGene:100804292	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR12183	PANTHER:PTHR12183:SF35
PFAM:PF13920	PFscan:PS50089	ProteinID:KRH36518	ProteinID:KRH36518.1	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0002337BBA	UniProt:I1KZW9	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr9:+:634938..636405

Molecular Weight (calculated)

21645.0 Da

IEP (calculated)

7.509

GRAVY (calculated)

-0.404

Length

196 amino acids

Sequence
(BLAST)

001: MSQLGAVLRT QREPRRSTIL GLLTEQMDGV DSGTRRRRSF KERFGFIGMG CCGATWGFRS DALSVTQGEQ QQQETDPECV GPAGLGSGMN LAAALAAERQ
101: LRGPQEEAVR APGTPWRVSL MRLLEETEAE KEKEKEKEEN VVGNDSVCCV CMGRKKGAAF IPCGHTFCRV CSRELWLNRG SCPLCNRSIL EILDIF

Best Arabidopsis Sequence Match ( AT4G03965.1 )
(BLAST)

001: MSQLGVETSQ AQPETPQSTT FLDLLRLQMD GLDRSRRRKR TLKERLGFKR IGCCGPTWGL RLTSNTGEDD DEPFENRLVS GSDHVTGPLN QGMNLATALA
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5XV87]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.