Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32036 | Canola | cytosol | 99.05 | 99.05 |
| CDY08650 | Canola | cytosol | 96.21 | 96.21 |
| AT1G62370.1 | Thale cress | cytosol | 58.29 | 60.29 |
| KRH36518 | Soybean | mitochondrion | 35.55 | 38.27 |
| Bra000784.1-P | Field mustard | nucleus | 36.02 | 37.62 |
| GSMUA_Achr1P18240_001 | Banana | nucleus | 30.81 | 36.93 |
| KRH11501 | Soybean | cytosol, mitochondrion, nucleus, plastid | 36.49 | 36.84 |
| Bra019391.1-P | Field mustard | nucleus | 34.12 | 36.55 |
| GSMUA_Achr3P12970_001 | Banana | cytosol | 29.86 | 36.42 |
| Bra013603.1-P | Field mustard | cytosol | 25.12 | 26.11 |
| Bra015092.1-P | Field mustard | nucleus | 12.32 | 12.56 |
| Bra029623.1-P | Field mustard | nucleus | 6.64 | 6.54 |
| Bra040362.1-P | Field mustard | nucleus | 10.43 | 6.36 |
| Bra001236.1-P | Field mustard | nucleus | 6.64 | 6.33 |
Protein Annotations
| EnsemblPlants:Bra034501.1 | EnsemblPlants:Bra034501.1-P | EnsemblPlantsGene:Bra034501 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF35 | PFAM:PF13920 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000253E577 | UniProt:M4F0A8 | MapMan:35.2 |
Description
AT1G62370 (E=2e-073) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrScaffold000096:+:515957..516592
Molecular Weight (calculated)
23224.4 Da
IEP (calculated)
4.258
GRAVY (calculated)
-0.411
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQLGDLLRE SADETGSGRT MMLGLLEEDR IDGEDRATSK WSTLKQRLRF DWVGCCGGPT LLRLRGSEAP VAEEDEDDEE EEEHSGQNRV IDLSNSVPDP
101: GLVAETECLT RGTRNLAEAL AEERLARGEN VTEASVAKVP LMKLLAETEG CDATTWTGAD PLCCVCMGRE KGAAFIPCGH TYCRVCSREI WMNRGSCPLC
201: NRSIFDVLDL Y
101: GLVAETECLT RGTRNLAEAL AEERLARGEN VTEASVAKVP LMKLLAETEG CDATTWTGAD PLCCVCMGRE KGAAFIPCGH TYCRVCSREI WMNRGSCPLC
201: NRSIFDVLDL Y
001: MSQLGDLLRE SEDGTRSERT MMMSLLEEDQ INGGDRTMSK WTTLKQRLRF DWVGCCGKPL TLRLRQAETP IVVDDDDDEE ESQNQVVDFS DPGTGTELDC
101: LTRGSTRNLA EALAEERLAH VTEEETAVTK VPLMRLLAES DGCDSTTTWL GNDPLCCVCM GREKGAAFIP CGHTYCRVCS REIWMNRGTC PLCNRSIFDV
201: LDLY
101: LTRGSTRNLA EALAEERLAH VTEEETAVTK VPLMRLLAES DGCDSTTTWL GNDPLCCVCM GREKGAAFIP CGHTYCRVCS REIWMNRGTC PLCNRSIFDV
201: LDLY
Arabidopsis Description
F2401.10 [Source:UniProtKB/TrEMBL;Acc:O48801]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.