Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90849 | Canola | nucleus | 100.0 | 100.0 |
| AT4G03965.1 | Thale cress | cytosol | 68.32 | 66.03 |
| Bra019391.1-P | Field mustard | nucleus | 50.49 | 51.78 |
| GSMUA_Achr1P18240_001 | Banana | nucleus | 37.13 | 42.61 |
| Bra013603.1-P | Field mustard | cytosol | 42.57 | 42.36 |
| GSMUA_Achr3P12970_001 | Banana | cytosol | 36.14 | 42.2 |
| Solyc02g081180.1.1 | Tomato | nucleus | 40.59 | 40.39 |
| PGSC0003DMT400043086 | Potato | nucleus | 39.11 | 37.98 |
| PGSC0003DMT400061842 | Potato | mitochondrion | 43.07 | 36.1 |
| Bra034501.1-P | Field mustard | cytosol | 37.62 | 36.02 |
| Solyc03g031830.1.1 | Tomato | nucleus | 43.07 | 35.51 |
| Bra015092.1-P | Field mustard | nucleus | 12.87 | 12.56 |
| Bra029623.1-P | Field mustard | nucleus | 6.44 | 6.07 |
| Bra040362.1-P | Field mustard | nucleus | 10.4 | 6.07 |
| Bra001236.1-P | Field mustard | nucleus | 5.45 | 4.98 |
Protein Annotations
| EnsemblPlants:Bra000784.1 | EnsemblPlants:Bra000784.1-P | EnsemblPlantsGene:Bra000784 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000253FD01 | UniProt:M4C9A5 | MapMan:35.2 |
Description
AT4G03965 (E=4e-063) | protein binding / zinc ion binding
Coordinates
chrA03:+:13094486..13095094
Molecular Weight (calculated)
22362.9 Da
IEP (calculated)
8.672
GRAVY (calculated)
-0.368
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MSELGLGTHH ATPASPETTT FLDLLRQIDV HDHTRRKKRT LKERLGFKRI GCCGPAWGLR LTNNTRARER DEPFGTGLVS ELDHVTGRMN LATALAAERH
101: YQREPTAASS GSSTPLPVSL MRLLEETAER VVVEGTETER VTASSTVKGS DSVCRVCMGR KKGAAFIPCG HTFCRVCSRE VWLNRGSCPL CNRPIIEILD
201: IY
101: YQREPTAASS GSSTPLPVSL MRLLEETAER VVVEGTETER VTASSTVKGS DSVCRVCMGR KKGAAFIPCG HTFCRVCSRE VWLNRGSCPL CNRPIIEILD
201: IY
001: MSQLGVETSQ AQPETPQSTT FLDLLRLQMD GLDRSRRRKR TLKERLGFKR IGCCGPTWGL RLTSNTGEDD DEPFENRLVS GSDHVTGPLN QGMNLATALA
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5XV87]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.