Factsheet for Bra019391.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007437.1-P
Bra007641.1-P
Bra011335.1-P
Bra012095.1-P
Bra014547.1-P
Bra023956.1-P
Bra029577.1-P
Bra032668.1-P
Bra033217.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22250.1	Bra032668.1-P	AT1G02140.1	21798944
AT4G22250.1	Bra033217.1-P	AT1G02140.1	21798944
AT4G22250.1	Bra007437.1-P	AT3G59220.1	21798944
AT4G22250.1	Bra014547.1-P	AT3G59220.1	21798944
AT4G22250.1	Bra007641.1-P	AT3G61920.1	21798944
AT4G22250.1	Bra029577.1-P	AT4G05420.1	21798944
AT4G22250.1	Bra011335.1-P	AT4G32295.1	21798944
AT4G22250.1	Bra023956.1-P	AT4G32295.1	21798944
AT4G22250.1	Bra012095.1-P	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98736	Canola	nucleus	85.79	84.08
AT4G22250.1	Thale cress	cytosol	63.96	58.88
Bra000784.1-P	Field mustard	nucleus	51.78	50.49
Bra013603.1-P	Field mustard	cytosol	51.27	49.75
GSMUA_Achr1P18240_001	Banana	nucleus	34.01	38.07
Solyc02g081180.1.1	Tomato	nucleus	39.09	37.93
GSMUA_Achr3P12970_001	Banana	cytosol	32.99	37.57
PGSC0003DMT400043086	Potato	nucleus	39.59	37.5
Bra034501.1-P	Field mustard	cytosol	36.55	34.12
PGSC0003DMT400061842	Potato	mitochondrion	40.61	33.2
Solyc03g031830.1.1	Tomato	nucleus	40.61	32.65
Bra015092.1-P	Field mustard	nucleus	15.23	14.49
Bra029623.1-P	Field mustard	nucleus	7.61	7.01
Bra040362.1-P	Field mustard	nucleus	10.66	6.07
Bra001236.1-P	Field mustard	nucleus	6.6	5.88

Protein Annotations

EnsemblPlants:Bra019391.1	EnsemblPlants:Bra019391.1-P	EnsemblPlantsGene:Bra019391	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12183	PANTHER:PTHR12183:SF20	PFAM:PF13920	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002540D88	UniProt:M4DS98	MapMan:35.2

Description

AT4G03965 (E=1e-049) | protein binding / zinc ion binding

Coordinates

chrA03:-:24494596..24495189

Molecular Weight (calculated)

22147.6 Da

IEP (calculated)

7.850

GRAVY (calculated)

-0.495

Length

197 amino acids

Sequence
(BLAST)

001: MSELERGTSQ MTTTETHRTT TFLDLLRRQM SGVDRTRRKR TLKERLRFKC IGCCGPIRRL HQPNNTLHSP TTSSEDELET RFAPGSGSGM NLATALEAER
101: YNRGDQTEVD MTPTRVSLMR LLDETAERAV DDGGETEILT ALTGNDTVCC VCMGRKRGAA FIPCGHTFCR VCSRELWLNR GSCPLCNRPI VEILDIF

Best Arabidopsis Sequence Match ( AT4G22250.1 )
(BLAST)

001: MMSELDLGTS QRMTETHRTT TTFLDLLRRQ MSGHDLTRRK RTLKERLRFK CIGCCGPTWN LRLTNNTTLH SPTSRDDEIE ELQIETGLVL ESDHGSGTGM
101: NLATALEAER YNRGESTEAE ADMTPRRVSL MRLLEETAEK IVDDDGKETE ILTASIGTLT GNDSVCCVCM GRKKGAAFIP CGHTFCRVCS RELWLNRGSC
201: PLCNRPIIEI LDIF

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GXD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.