Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra004436.1-P | |
| Bra017963.1-P | |
| Bra018081.1-P | |
| Bra033769.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32295.1 | Bra004436.1-P | AT2G47700.1 | 21798944 |
| AT4G32295.1 | Bra018081.1-P | AT3G48150.1 | 21798944 |
| AT4G32295.1 | Bra033769.1-P | AT3G48150.1 | 21798944 |
| AT4G32295.1 | Bra017963.1-P | AT3G49690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75234 | Canola | cytosol | 95.09 | 98.82 |
| Bra023956.1-P | Field mustard | cytosol | 75.09 | 76.54 |
| AT4G32295.1 | Thale cress | cytosol | 64.53 | 71.85 |
| KRH61761 | Soybean | nucleus | 48.3 | 46.55 |
| KRH52430 | Soybean | nucleus | 48.3 | 46.21 |
| Bra015008.1-P | Field mustard | nucleus | 42.26 | 34.67 |
| Bra028356.1-P | Field mustard | nucleus | 41.89 | 33.74 |
| Solyc08g059700.1.1 | Tomato | nucleus | 41.89 | 32.74 |
| GSMUA_Achr11P... | Banana | nucleus | 46.42 | 32.2 |
| VIT_04s0008g05520.t01 | Wine grape | nucleus | 53.96 | 31.71 |
| PGSC0003DMT400082721 | Potato | nucleus | 41.51 | 30.99 |
| GSMUA_Achr6P20490_001 | Banana | mitochondrion | 43.77 | 30.69 |
Protein Annotations
| EnsemblPlants:Bra011335.1 | EnsemblPlants:Bra011335.1-P | EnsemblPlantsGene:Bra011335 | Gene3D:1.10.246.20 | PANTHER:PTHR35300 | PANTHER:PTHR35300:SF1 |
| SEG:seg | UniParc:UPI0002546441 | UniProt:M4D4D1 | MapMan:15.5.53.5.2 | : | : |
Description
AT4G32295 (E=6e-085) | unknown protein
Coordinates
chrA01:-:2684701..2685967
Molecular Weight (calculated)
30267.0 Da
IEP (calculated)
9.115
GRAVY (calculated)
-0.686
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRPGPRPYE CIRRVWHSDR HQPMRGLLIQ EIFRIVCEIH SQSTKKNTEW QEKLPVVVLR AEEIMYSKAN SEAEYMDMNT LLDRTNDAIN TIIRLDETTE
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST KLETILSPQY QAFMKQNNFC PKNLQVMSFH SDVQEKRVER CSVSKYSSYP LCYSFRVPSL
201: PRSSNVTDSY KSNKSSKPVI AADATKGTTT FDGCDLSLRL GPLGDIKTPS QKRSKISSCN NSNKS
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST KLETILSPQY QAFMKQNNFC PKNLQVMSFH SDVQEKRVER CSVSKYSSYP LCYSFRVPSL
201: PRSSNVTDSY KSNKSSKPVI AADATKGTTT FDGCDLSLRL GPLGDIKTPS QKRSKISSCN NSNKS
001: MPRPGPRPYD CIRRAWHSDR HQPMRGLLIQ EIFRIVCEIH SQSTRKNTEW QEKLPVVVLR AEEIMYSKAN SEAEYMDMKT LLDRTNDAIN TIIRLDETTE
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN
Arabidopsis Description
Histone acetyltransferase [Source:UniProtKB/TrEMBL;Acc:Q84JY3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.