Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400012702 | |
| PGSC0003DMT400063189 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32295.1 | PGSC0003DMT400063189 | AT3G48150.1 | 21798944 |
| AT4G32295.1 | PGSC0003DMT400012702 | AT3G49690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g059700.1.1 | Tomato | nucleus | 78.31 | 82.01 |
| Bra023956.1-P | Field mustard | cytosol | 31.83 | 43.46 |
| CDY13480 | Canola | cytosol | 31.83 | 43.46 |
| AT4G32295.1 | Thale cress | cytosol | 29.01 | 43.28 |
| CDX75234 | Canola | cytosol | 30.99 | 43.14 |
| CDX72353 | Canola | cytosol | 29.01 | 42.56 |
| CDX68833 | Canola | nucleus | 30.42 | 41.86 |
| KRH52430 | Soybean | nucleus | 32.39 | 41.52 |
| Bra011335.1-P | Field mustard | nucleus | 30.99 | 41.51 |
| KRH61761 | Soybean | nucleus | 30.7 | 39.64 |
| VIT_04s0008g05520.t01 | Wine grape | nucleus | 44.23 | 34.81 |
| GSMUA_Achr6P20490_001 | Banana | mitochondrion | 33.24 | 31.22 |
| GSMUA_Achr11P... | Banana | nucleus | 33.52 | 31.15 |
| PGSC0003DMT400079381 | Potato | nucleus | 35.21 | 25.99 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400082721 | EnsemblPlantsGene:PGSC0003DMG400032780 | EntrezGene:102603247 | Gene3D:1.10.246.20 | PANTHER:PTHR35300 | PGSC:PGSC0003DMG400032780 |
| RefSeq:XP_006343528.1 | SEG:seg | UniParc:UPI000294FCBB | UniProt:M1D654 | MapMan:15.5.53.5.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400032780]
Coordinates
chr8:-:16652247..16654080
Molecular Weight (calculated)
40532.7 Da
IEP (calculated)
8.616
GRAVY (calculated)
-0.782
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKSTRAYEC VKKAWHSDTH QPIRGSFIQE IFRIVNEVHG SATKKNMEWQ EKLPIVVFRA EEIMYSKANS EAEYMDLKTL WDRLNDAIDT IIRREYKDES
101: KSRGLLQPCI EAALHLISPK RIRNTSPRYY PTPQANGNSH DRNRENPFPN IQFFSKLKNS NPQSNKMLPF STLKLPMQTT RTSPSSCSIY PLYNGCQSEP
201: SGPKFGSTSD DKSNAQLMDE NKKITLRNTL SCNLNASSET SRTDFEDVSE NQTVIGCDLS LRLGSFLVPC TRVENALCED EKAGDKCKLN DLSPQFNRGL
301: SFFLNENADK NQFESSSMSS DSQNLNVKSV LAKRKHGEDQ QIFWPVKLPF NKFRS
101: KSRGLLQPCI EAALHLISPK RIRNTSPRYY PTPQANGNSH DRNRENPFPN IQFFSKLKNS NPQSNKMLPF STLKLPMQTT RTSPSSCSIY PLYNGCQSEP
201: SGPKFGSTSD DKSNAQLMDE NKKITLRNTL SCNLNASSET SRTDFEDVSE NQTVIGCDLS LRLGSFLVPC TRVENALCED EKAGDKCKLN DLSPQFNRGL
301: SFFLNENADK NQFESSSMSS DSQNLNVKSV LAKRKHGEDQ QIFWPVKLPF NKFRS
001: MPRPGPRPYD CIRRAWHSDR HQPMRGLLIQ EIFRIVCEIH SQSTRKNTEW QEKLPVVVLR AEEIMYSKAN SEAEYMDMKT LLDRTNDAIN TIIRLDETTE
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN
101: TGEFLQPCIE AALHLGCTPR RASRSQRNIN PRCYLSQDST NLDNMLSQVF MKPNNFAPKN LAVAQENCPV SKYSAYPLCY SFRPISDSCK SKNSRPASLI
201: DATNGITFGG CECDLSLRLG PLGPPTQKRS KISSNNNN
Arabidopsis Description
Histone acetyltransferase [Source:UniProtKB/TrEMBL;Acc:Q84JY3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.