Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400037024 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G49690.1 | PGSC0003DMT400037024 | AT5G62090.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g077260.2.1 | Tomato | nucleus | 93.62 | 94.77 |
| CDY08749 | Canola | nucleus | 12.77 | 82.35 |
| HORVU5Hr1G098540.1 | Barley | nucleus | 48.63 | 51.45 |
| Os03t0771100-01 | Rice | nucleus | 48.94 | 50.16 |
| GSMUA_Achr4P28090_001 | Banana | nucleus | 34.35 | 50.0 |
| TraesCS5D01G415800.1 | Wheat | nucleus | 47.11 | 49.84 |
| TraesCS5B01G410500.1 | Wheat | nucleus | 47.11 | 49.84 |
| TraesCS5A01G405800.1 | Wheat | nucleus | 46.81 | 49.52 |
| Zm00001d034207_P001 | Maize | nucleus | 46.81 | 49.04 |
| GSMUA_Achr5P21840_001 | Banana | nucleus | 30.7 | 48.79 |
| EER90818 | Sorghum | nucleus | 48.33 | 48.62 |
| GSMUA_Achr10P... | Banana | nucleus | 39.21 | 48.13 |
| Zm00001d013164_P002 | Maize | nucleus | 47.42 | 44.57 |
| GSMUA_Achr5P01930_001 | Banana | nucleus | 37.39 | 43.77 |
| GSMUA_Achr4P32240_001 | Banana | nucleus | 36.17 | 42.65 |
| CDY08162 | Canola | nucleus | 37.39 | 41.0 |
| Bra017963.1-P | Field mustard | nucleus | 37.08 | 40.67 |
| AT3G49690.1 | Thale cress | nucleus | 38.3 | 40.65 |
| GSMUA_Achr7P08150_001 | Banana | nucleus | 31.61 | 40.62 |
| CDY65680 | Canola | nucleus | 36.47 | 40.0 |
| CDY18676 | Canola | nucleus | 37.99 | 39.81 |
| CDY60980 | Canola | nucleus | 37.69 | 39.49 |
| PGSC0003DMT400009926 | Potato | nucleus | 35.56 | 39.0 |
| Bra037828.1-P | Field mustard | nucleus | 37.08 | 38.85 |
| PGSC0003DMT400005085 | Potato | nucleus | 35.26 | 38.67 |
| KRH77168 | Soybean | nucleus | 40.73 | 38.62 |
| PGSC0003DMT400055148 | Potato | nucleus | 38.6 | 38.48 |
| KRH28317 | Soybean | nucleus | 40.43 | 38.22 |
| GSMUA_Achr6P31740_001 | Banana | nucleus | 38.3 | 37.61 |
| PGSC0003DMT400035941 | Potato | nucleus | 20.36 | 36.61 |
| GSMUA_Achr6P01850_001 | Banana | nucleus | 36.17 | 35.74 |
| CDY45629 | Canola | nucleus | 39.82 | 35.6 |
| Bra024419.1-P | Field mustard | nucleus | 39.82 | 35.6 |
| PGSC0003DMT400048261 | Potato | nucleus | 39.51 | 35.33 |
| CDY08748 | Canola | nucleus | 39.51 | 35.33 |
| PGSC0003DMT400000932 | Potato | nucleus | 31.0 | 35.29 |
| AT5G65790.1 | Thale cress | nucleus | 39.51 | 34.76 |
| CDY52538 | Canola | nucleus | 38.6 | 34.42 |
| CDY37840 | Canola | nucleus | 38.6 | 34.23 |
| Bra031847.1-P | Field mustard | nucleus | 38.6 | 34.23 |
| PGSC0003DMT400022009 | Potato | nucleus | 27.36 | 30.72 |
| PGSC0003DMT400022402 | Potato | nucleus | 28.57 | 28.66 |
| PGSC0003DMT400020979 | Potato | nucleus | 14.89 | 24.62 |
| PGSC0003DMT400062839 | Potato | nucleus | 17.02 | 18.24 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102603425 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1A1M3 | InterPro:Myb_dom | PFAM:PF00249 |
| EnsemblPlantsGene:PGSC0003DMG400004948 | PGSC:PGSC0003DMG400004948 | EnsemblPlants:PGSC0003DMT400012702 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF928 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0002949699 | RefSeq:XP_006356817.1 | SEG:seg |
Description
MYB transcription factor MYB161 [Source:PGSC_GENE;Acc:PGSC0003DMG400004948]
Coordinates
chr4:+:66350883..66352780
Molecular Weight (calculated)
37250.0 Da
IEP (calculated)
7.813
GRAVY (calculated)
-0.719
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCDKN NVKRGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIC SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLFGK QRQKQGSRKG KEINTISTIS NNINNMNQNP CWPELPIMQQ PIQFSNNDHT SIRKLLIKLG GKFSENDQLT NVVSPNSQYP
201: IDNSSMQLMY QNHINLISSS PIDNVFNNMT TPNTDPYNMN GEASNFTAEF EHMINNHQQK LDGLEFLYED DVFIDKSAST SGGNLDWESM NPYVLPLPPI
301: AASNDGGNFQ QGVILQEGAL DELRYPMAQ
101: TDNDIKNYWN TKLKKKLFGK QRQKQGSRKG KEINTISTIS NNINNMNQNP CWPELPIMQQ PIQFSNNDHT SIRKLLIKLG GKFSENDQLT NVVSPNSQYP
201: IDNSSMQLMY QNHINLISSS PIDNVFNNMT TPNTDPYNMN GEASNFTAEF EHMINNHQQK LDGLEFLYED DVFIDKSAST SGGNLDWESM NPYVLPLPPI
301: AASNDGGNFQ QGVILQEGAL DELRYPMAQ
001: MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE NSGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEENIIC SLYLTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF
101: TDNDIKNYWN TRLKKKLINK QRKELQEACM EQQEMMVMMK RQHQQQQIQT SFMMRQDQTM FTWPLHHHNV QVPALFMNQT NSFCDQEDVK PVLIKNMVKI
201: EDQELEKTNP HHHQDSMTNA FDHLSFSQLL LDPNHNHLGS GEGFSMNSIL SANTNSPLLN TSNDNQWFGN FQAETVNLFS GASTSTSADQ STISWEDISS
301: LVYSDSKQFF
Arabidopsis Description
RAX3RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.