Factsheet for GSMUA_Achr5P01930_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P07930_001
GSMUA_Achr1P16220_001
GSMUA_Achr2P03310_001
GSMUA_Achr6P01920_001
GSMUA_Achr7P05870_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49690.1	GSMUA_Achr6P01920_001	AT2G24860.1	21798944
AT3G49690.1	GSMUA_Achr10P...	AT5G62090.1	21798944
AT3G49690.1	GSMUA_Achr1P07930_001	AT5G62090.1	21798944
AT3G49690.1	GSMUA_Achr1P16220_001	AT5G62090.1	21798944
AT3G49690.1	GSMUA_Achr2P03310_001	AT5G62090.1	21798944
AT3G49690.1	GSMUA_Achr7P05870_001	AT5G62090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08749	Canola	nucleus	14.59	80.39
GSMUA_Achr4P28090_001	Banana	nucleus	43.42	53.98
GSMUA_Achr5P09280_001	Banana	nucleus	35.94	52.6
GSMUA_Achr5P21840_001	Banana	nucleus	36.65	49.76
GSMUA_Achr4P01050_001	Banana	nucleus	37.72	46.9
GSMUA_Achr10P...	Banana	nucleus	43.42	45.52
GSMUA_Achr9P09790_001	Banana	nucleus	41.28	44.11
GSMUA_Achr4P32240_001	Banana	nucleus	43.06	43.37
GSMUA_Achr1P03140_001	Banana	nucleus	39.15	43.31
GSMUA_Achr1P04910_001	Banana	nucleus	37.01	42.8
GSMUA_Achr7P08150_001	Banana	nucleus	38.08	41.8
Os03t0771100-01	Rice	nucleus	46.26	40.5
TraesCS5D01G415800.1	Wheat	nucleus	43.77	39.55
TraesCS5B01G410500.1	Wheat	nucleus	43.77	39.55
HORVU5Hr1G098540.1	Barley	nucleus	43.77	39.55
Zm00001d034207_P001	Maize	nucleus	44.13	39.49
GSMUA_Achr11P...	Banana	nucleus	36.65	39.46
TraesCS5A01G405800.1	Wheat	nucleus	43.06	38.91
EER90818	Sorghum	nucleus	45.2	38.84
GSMUA_AchrUn_...	Banana	nucleus	37.01	38.1
CDY65680	Canola	nucleus	40.21	37.67
CDY08162	Canola	nucleus	40.21	37.67
GSMUA_Achr6P31740_001	Banana	nucleus	44.84	37.61
Solyc04g077260.2.1	Tomato	nucleus	43.42	37.54
PGSC0003DMT400012702	Potato	nucleus	43.77	37.39
Bra017963.1-P	Field mustard	nucleus	39.86	37.33
GSMUA_Achr7P25060_001	Banana	nucleus	38.79	37.33
GSMUA_Achr4P25260_001	Banana	nucleus	37.01	37.28
GSMUA_Achr5P10690_001	Banana	nucleus	37.01	37.28
CDY18676	Canola	nucleus	41.64	37.26
KRH77168	Soybean	nucleus	45.91	37.18
GSMUA_Achr9P13610_001	Banana	nucleus	40.93	37.1
AT3G49690.1	Thale cress	nucleus	40.93	37.1
KRH28317	Soybean	nucleus	45.91	37.07
GSMUA_Achr5P22760_001	Banana	nucleus	41.64	37.03
GSMUA_Achr6P30830_001	Banana	nucleus	41.28	36.83
CDY60980	Canola	nucleus	40.93	36.62
GSMUA_Achr8P24780_001	Banana	nucleus	39.86	36.48
Bra037828.1-P	Field mustard	nucleus	40.21	35.99
Zm00001d013164_P002	Maize	nucleus	44.13	35.43
GSMUA_Achr2P04200_001	Banana	nucleus	37.72	35.22
GSMUA_Achr6P01850_001	Banana	nucleus	41.28	34.83
GSMUA_Achr8P14190_001	Banana	nucleus	37.72	33.87
GSMUA_Achr7P19530_001	Banana	nucleus	40.57	33.43
CDY45629	Canola	nucleus	41.99	32.07
CDY08748	Canola	nucleus	41.64	31.79
Bra024419.1-P	Field mustard	nucleus	41.64	31.79
CDY52538	Canola	nucleus	41.64	31.71
AT5G65790.1	Thale cress	nucleus	41.99	31.55
Bra031847.1-P	Field mustard	nucleus	41.64	31.54
CDY37840	Canola	nucleus	41.64	31.54
GSMUA_Achr3P10060_001	Banana	nucleus	31.32	27.5

Protein Annotations

EnsemblPlants:GSMUA_Achr5P01930_001	EnsemblPlants:GSMUA_Achr5T01930_001	EnsemblPlantsGene:GSMUA_Achr5G01930_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF654	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002950C69	UniProt:M0SUX2	MapMan:15.5.2.1	:	:

Description

MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G01930_001]

Coordinates

chr5:-:1183911..1184954

Molecular Weight (calculated)

31639.0 Da

IEP (calculated)

6.936

GRAVY (calculated)

-0.799

Length

281 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKKGSWSPE EDAKLKSYIE QHGTGGNWIA LPHKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDNIIF RLYISIGSRW SIIASQLPGR
101: TDNDVKNYWN TKLKKKFLGK QRKETSAADP KQETRGDGHG DLGITGWPHQ PALTYPIDHV CHDVGQGQAS MRNEHGVRDS DDGDASNSLV MPSTVPQQQI
201: YDDPFSLAWS SLQQNSGAQA LLCPTSFSTE LDEILRFNLT KMEGADRPVD ESNAATKSEE NMNWNEVSPF LYPNIYDERR L

Best Arabidopsis Sequence Match ( AT5G65790.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE NSGTGGNWIA LPQKIGLRRC GKSCRLRWLN YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLLNK QRKEFQEARM KQEMVMMKRQ QQGQGQGQSN GSTDLYLNNM FGSSPWPLLP QLPPPHHQIP LGMMEPTSCN YYQTTPSCNL
201: EQKPLITLKN MVKIEEEQER TNPDHHHQDS VTNPFDFSFS QLLLDPNYYL GSGGGGEGDF AIMSSSTNSP LPNTSSDQHP SQQQEILQWF GSSNFQTEAI
301: NDMFINNNNN IVNLETIENT KVYGDASVAG AAVRAALGGG TTSTSADQST ISWEDITSLV NSEDASYFNA PNHV

Arabidopsis Description

ATMYB68At5g65790 [Source:UniProtKB/TrEMBL;Acc:O49538]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.