Factsheet for GSMUA_Achr7P05870_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P11500_001
GSMUA_Achr1P27460_001
GSMUA_Achr2P02250_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P22810_001
GSMUA_Achr3P26230_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr5P09160_001
GSMUA_Achr5P27050_001
GSMUA_Achr6P04640_001
GSMUA_Achr6P26840_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P27540_001
GSMUA_Achr8P06630_001
GSMUA_Achr8P07590_001
GSMUA_Achr8P33080_001
GSMUA_Achr9P06410_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	GSMUA_Achr2P02250_001	AT2G47700.1	21798944
AT5G62090.1	GSMUA_Achr5P27050_001	AT2G47700.1	21798944
AT5G62090.1	GSMUA_Achr8P06630_001	AT2G47700.1	21798944
AT5G62090.1	GSMUA_Achr10P...	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr3P22810_001	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr8P07590_001	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr8P33080_001	AT3G44720.1	21798944
AT5G62090.1	GSMUA_AchrUn_...	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr1P11500_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr1P27460_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr5P09160_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr6P26840_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr9P06410_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr10P...	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr2P13200_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr3P26230_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr4P03120_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr4P28270_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr4P32230_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr5P01960_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr6P04640_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr7P08050_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr7P27540_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr10P...	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38603	Soybean	plastid	48.25	25.99
KRG88471	Soybean	nucleus, plastid	38.11	25.47
Solyc03g026190.2.1	Tomato	plastid	48.6	24.65
GSMUA_Achr1P16220_001	Banana	nucleus	53.15	21.75
CDX89417	Canola	nucleus	25.87	19.22
KRH38604	Soybean	nucleus	47.9	16.96
VIT_16s0100g00500.t01	Wine grape	plastid	51.05	16.9
Zm00001d035990_P002	Maize	plastid	45.8	16.79
KXG19170	Sorghum	plastid	45.45	16.65
GSMUA_Achr1P07930_001	Banana	nucleus	46.15	16.62
KRH09132	Soybean	plastid	50.35	16.38
KRH09131	Soybean	nucleus, plastid	49.65	16.34
Os06t0126000-02	Rice	cytosol, nucleus	46.85	16.3
HORVU7Hr1G115870.4	Barley	plastid	45.8	16.27
GSMUA_Achr10P...	Banana	nucleus	44.06	16.26
TraesCS7B01G437100.1	Wheat	plastid	45.45	16.11
TraesCS7A01G520700.1	Wheat	nucleus	45.1	15.99
Zm00001d045516_P006	Maize	nucleus, plastid	43.01	15.87
AT5G62090.1	Thale cress	nucleus	45.1	15.81
TraesCS7D01G146100.2	Wheat	nucleus, plastid	45.8	15.56
TraesCS7B01G047100.4	Wheat	plastid	46.15	15.51
TraesCS7A01G144600.3	Wheat	nucleus, plastid	46.15	15.44
CDY30691	Canola	nucleus	40.56	15.3
TraesCS4A01G441500.1	Wheat	nucleus, plastid	46.15	15.3
Bra013897.1-P	Field mustard	nucleus	21.33	15.29
TraesCS7D01G050000.5	Wheat	nucleus, plastid	45.8	15.29
HORVU7Hr1G010050.2	Barley	nucleus, plastid	46.15	15.09
HORVU7Hr1G029650.10	Barley	plastid	45.8	14.99
TraesCS7D01G510400.2	Wheat	nucleus	45.45	14.96
TraesCS7A01G054900.2	Wheat	nucleus, plastid	45.8	14.94
PGSC0003DMT400037024	Potato	plastid	47.55	14.85
KXG34470	Sorghum	nucleus, plastid	38.11	14.77
GSMUA_Achr2P03310_001	Banana	nucleus	41.26	14.62
Zm00001d018890_P006	Maize	nucleus, plastid	38.11	14.48
CDY54085	Canola	nucleus, plastid	33.22	13.48
AT4G25515.1	Thale cress	nucleus, plastid	31.82	13.28
CDY52362	Canola	nucleus	31.82	13.23
CDX92713	Canola	nucleus, plastid	31.47	13.1
Bra019159.1-P	Field mustard	nucleus, plastid	31.12	13.05
CDY50201	Canola	nucleus, plastid	31.12	13.05
AT4G25520.1	Thale cress	plastid	33.22	12.7
VIT_02s0025g04390.t01	Wine grape	vacuole	29.72	12.37
CDY57709	Canola	nucleus, plastid	20.98	12.2
Bra029289.1-P	Field mustard	nucleus	23.43	10.14
CDX92714	Canola	cytosol	16.43	8.83
GSMUA_Achr6P18610_001	Banana	plastid	26.57	8.68
GSMUA_Achr2P20700_001	Banana	plastid	24.83	8.28
GSMUA_Achr3P02850_001	Banana	nucleus	25.87	8.26
GSMUA_Achr10P...	Banana	nucleus, plastid	25.17	8.19
Bra010458.1-P	Field mustard	nucleus, plastid	15.04	7.13
GSMUA_Achr5P25900_001	Banana	nucleus	18.18	5.42

Protein Annotations

EnsemblPlants:GSMUA_Achr7P05870_001	EnsemblPlants:GSMUA_Achr7T05870_001	EnsemblPlantsGene:GSMUA_Achr7G05870_001	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12
PFAM:PF01803	SEG:seg	UniParc:UPI00029653F9	UniProt:M0TF27	MapMan:35.1	:

Description

transcriptional corepressor SEUSS, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G05870_001]

Coordinates

chr7:-:4351172..4354434

Molecular Weight (calculated)

31980.9 Da

IEP (calculated)

8.683

GRAVY (calculated)

-0.518

Length

286 amino acids

Sequence
(BLAST)

001: MWCKFSHSQC TSYSDLCLLD MTGCILNSAG NSSGPSVGAS SIVNDANSAL SGTQLQRSVS INNEPCMRLP ASPMSFSSNS TSDSWVMDGS IMQQSLGSEH
101: ARKRAASSAI SEIIAQAPDD SVHISKKARL DLKDDIMQRM VIQQLLQGSE PEPELHGHQN PQLHAMLQQQ RLTQLQQHMM QSFPQTQQAP ITFQQQQQQR
201: NHLQQRPVEV AAPANHNFDV KKGSCRVMQY LYHQRHRPAD NSILYWRKFV AEYFAPPAKK RWCLSSYNNV GNHALGVFLQ SAKVSI

Best Arabidopsis Sequence Match ( AT4G25515.1 )
(BLAST)

001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL

Arabidopsis Description

SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.