Factsheet for Solyc03g026190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g077210.2.1
Solyc06g074530.1.1
Solyc07g055100.2.1
Solyc07g062840.2.1
Solyc11g066890.1.1
Solyc12g010890.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	Solyc06g074530.1.1	AT3G44720.1	21798944
AT5G62090.1	Solyc11g066890.1.1	AT3G44720.1	21798944
AT5G62090.1	Solyc07g055100.2.1	AT3G58630.1	21798944
AT5G62090.1	Solyc12g010890.1.1	AT3G58630.1	21798944
AT5G62090.1	Solyc04g077210.2.1	AT4G08150.1	21798944
AT5G62090.1	Solyc07g062840.2.1	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88471	Soybean	nucleus, plastid	56.21	74.07
KRH38603	Soybean	plastid	62.94	66.86
PGSC0003DMT400037024	Potato	plastid	94.5	58.19
KRH38604	Soybean	nucleus	73.4	51.24
VIT_16s0100g00500.t01	Wine grape	plastid	76.6	50.0
KRH09131	Soybean	nucleus, plastid	76.42	49.6
GSMUA_Achr7P05870_001	Banana	nucleus	24.65	48.6
KRH09132	Soybean	plastid	73.76	47.33
CDY57709	Canola	nucleus, plastid	38.3	43.9
AT5G62090.1	Thale cress	nucleus	62.77	43.38
CDY30691	Canola	nucleus	57.98	43.14
CDX89417	Canola	nucleus	28.19	41.3
GSMUA_Achr1P16220_001	Banana	nucleus	48.58	39.2
CDY50201	Canola	nucleus, plastid	47.16	39.0
Bra019159.1-P	Field mustard	nucleus, plastid	47.16	39.0
AT4G25515.1	Thale cress	nucleus, plastid	46.99	38.69
CDY52362	Canola	nucleus	47.16	38.66
CDY54085	Canola	nucleus, plastid	48.05	38.44
CDX92713	Canola	nucleus, plastid	46.81	38.43
Bra029289.1-P	Field mustard	nucleus	44.15	37.67
CDX92714	Canola	cytosol	34.93	37.03
AT4G25520.1	Thale cress	plastid	47.87	36.1
GSMUA_Achr10P...	Banana	nucleus	49.29	35.87
Bra013897.1-P	Field mustard	nucleus	25.35	35.84
GSMUA_Achr1P07930_001	Banana	nucleus	49.47	35.14
Bra010458.1-P	Field mustard	nucleus, plastid	34.57	32.34
KXG34470	Sorghum	nucleus, plastid	41.67	31.84
KXG19170	Sorghum	plastid	43.26	31.24
TraesCS7B01G437100.1	Wheat	plastid	44.68	31.23
GSMUA_Achr2P03310_001	Banana	nucleus	44.5	31.1
HORVU7Hr1G115870.4	Barley	plastid	44.33	31.06
TraesCS7A01G520700.1	Wheat	nucleus	44.33	30.98
Zm00001d045516_P006	Maize	nucleus, plastid	42.38	30.84
Zm00001d035990_P002	Maize	plastid	42.38	30.64
Os06t0126000-02	Rice	cytosol, nucleus	44.33	30.41
Zm00001d018890_P006	Maize	nucleus, plastid	39.89	29.88
TraesCS7D01G510400.2	Wheat	nucleus	44.5	28.88
TraesCS7D01G146100.2	Wheat	nucleus, plastid	42.91	28.74
TraesCS7A01G144600.3	Wheat	nucleus, plastid	43.09	28.42
TraesCS7B01G047100.4	Wheat	plastid	42.73	28.32
TraesCS7D01G050000.5	Wheat	nucleus, plastid	42.55	28.0
HORVU7Hr1G010050.2	Barley	nucleus, plastid	43.26	27.89
TraesCS4A01G441500.1	Wheat	nucleus, plastid	42.55	27.81
HORVU7Hr1G029650.10	Barley	plastid	42.73	27.57
TraesCS7A01G054900.2	Wheat	nucleus, plastid	42.38	27.25
Solyc06g059750.2.1	Tomato	nucleus, plastid	37.59	25.3
Solyc06g059760.2.1	Tomato	nucleus, plastid	36.17	22.72
Solyc11g005990.1.1	Tomato	nucleus	24.65	17.53

Protein Annotations

EnsemblPlants:Solyc03g026190.2.1	EnsemblPlantsGene:Solyc03g026190.2	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	PFAM:PF01803
SEG:seg	UniParc:UPI000276909C	UniProt:K4BF92	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3:-:3585001..3590656

Molecular Weight (calculated)

62333.9 Da

IEP (calculated)

9.060

GRAVY (calculated)

-0.477

Length

564 amino acids

Sequence
(BLAST)

001: MAPSRVAGGM AHSSSSSGIF FQGDGQSQVA GNSHLTSSFG NSSNSLPGNA RSSLGPLSGD VSNTVLNSVA SSGPSVGASS LVTDANSGLS GGPNLQRSAS
101: INTESYMRLP ASPLSFSSNN ISVSGSSVMD GSSVAQQSSN QDPNSQQPQH NQQLHGTSSA TSLPTSRVGQ VQLANGQGLR VPGSFIQDPV ALSQMQKKPR
201: LDIKQDDVMQ QQVLQQLLQR QDPVHMQNPS PQLQALVQQQ RLRQQQQQQH QLLQYLPPLQ RAQLLQQQQQ LQIRQQIQQQ SVQPVSGMKR PSDGVLCSRR
301: LMQYLYHQRQ RPSDNSIAYW RKFVAEYYSP RAKKRWCLSL YENVGHHSLG VFPQSTMDAW HCDICGSKSG RGFEATFEVL PRLNEIKFSS GVIDELLFLD
401: FPRECRFPSG LMMLEYAKAV QESVYEQLRV VREGRLRIIF TSDLKILSWE FCARRHEELL PRRLVAPQVN QLVQVAQKCQ STLTETGPDG VSQEDLQANS
501: NMVVTSGRQL AKSLELQSLN DLGFSKRYVR CLQIAEVVNS MKDLMDFCSE HKAGSIGLKE FPAT

Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)

001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS

Arabidopsis Description

SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.