Factsheet for Solyc06g059760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g056620.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43850.1	Solyc05g056620.1.1	AT1G69120.1	16854969

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g059750.2.1	Tomato	nucleus, plastid	71.49	76.61
VIT_18s0001g15320.t01	Wine grape	nucleus, plastid	70.49	69.33
KRH64564	Soybean	nucleus, plastid	69.04	68.06
KRH15928	Soybean	nucleus, plastid	67.26	66.01
CDY67669	Canola	mitochondrion, nucleus	17.37	65.55
KRH53367	Soybean	nucleus	69.27	64.72
KRH18102	Soybean	plastid	60.8	58.84
CDY40943	Canola	nucleus, plastid	46.33	53.75
Bra032192.1-P	Field mustard	nucleus, plastid	45.32	52.58
GSMUA_Achr10P...	Banana	nucleus, plastid	50.89	51.99
CDY14963	Canola	nucleus, plastid	42.43	51.63
GSMUA_Achr6P18610_001	Banana	plastid	49.44	50.68
Bra036931.1-P	Field mustard	nucleus, plastid	41.76	50.54
AT1G43850.1	Thale cress	nucleus, plastid	49.22	50.4
GSMUA_Achr2P20700_001	Banana	plastid	47.66	49.94
Os11t0207000-01	Rice	nucleus, plastid	49.67	48.8
TraesCS4D01G101500.1	Wheat	nucleus, plastid	49.11	48.57
GSMUA_Achr3P02850_001	Banana	nucleus	48.44	48.55
TraesCS4A01G211800.1	Wheat	nucleus, plastid	49.0	48.35
Os11t0207100-01	Rice	nucleus	50.11	48.23
TraesCS4B01G104300.1	Wheat	nucleus, plastid	48.66	47.92
Zm00001d007295_P003	Maize	nucleus, plastid	48.78	47.87
TraesCS4B01G104400.2	Wheat	nucleus, plastid	49.55	47.64
TraesCS4A01G211700.2	Wheat	nucleus, plastid	49.44	47.59
TraesCS4D01G101700.1	Wheat	nucleus, plastid	49.55	47.54
HORVU4Hr1G017160.3	Barley	nucleus, plastid	48.78	47.51
KXG28056	Sorghum	nucleus, plastid	49.55	47.44
Zm00001d049125_P002	Maize	nucleus, plastid	49.11	47.42
HORVU4Hr1G017140.2	Barley	plastid	49.44	47.33
Zm00001d023706_P002	Maize	nucleus	47.77	47.3
KXG23150	Sorghum	nucleus	48.66	47.14
Zm00001d041803_P001	Maize	nucleus	47.66	46.72
CDY70167	Canola	cytosol, mitochondrion, nucleus	12.36	39.08
Solyc03g026190.2.1	Tomato	plastid	22.72	36.17
GSMUA_Achr5P25900_001	Banana	nucleus	37.53	35.1
CDY69476	Canola	nucleus	7.46	24.54
Solyc11g005990.1.1	Tomato	nucleus	21.05	23.83

Protein Annotations

EnsemblPlants:Solyc06g059760.2.1	EnsemblPlantsGene:Solyc06g059760.2	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF17	PFAM:PF01803
SEG:seg	UniParc:UPI0002765D7E	UniProt:K4C6G3	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6:+:37642964..37656484

Molecular Weight (calculated)

97571.8 Da

IEP (calculated)

9.256

GRAVY (calculated)

-0.645

Length

898 amino acids

Sequence
(BLAST)

001: MVPTGPPNSL GGSQPVPSSL LRTNSGVMGG QGGSMPSPGG FPSMVSPRTM FGNMNMLGNA PNVSHQSFAN GGPNAGLAGP GNSQRGPVDH GAETDPLSGV
101: GNGMGFSAPS TSFMSSAMAT NPNSSQVQGQ QFPNPSGNHM LTDQQRSQQL DSQNVQHNQQ LQQFSSPINS QTQQQQHHFQ SMRGGLAPVK METQVTNDQT
201: PQQLQALRNL APVKMEPQQV QSMRGLAPVK VEQQQSDPSL FLHQQQQQQF LQMSRQSPQA AAAAQLLHQQ RLMQFQHHHQ LLKTAPQQRN PLQQQFQPQN
301: LAVRPPVKAV YEPGMCARRL THYIYQQQHR PEDNNIEFWR KFVAEYFAPN AKKKWCVSMY GSGRQTTGVF PQDVWHCEIC SRKPGRGFEA TAEVLPRLFK
401: IKYESGTLEE LLYVDMPREY QNSSGQIVLD YAKAIQESVF EQLRVVRDGQ LRLVFSQPDL KIVSWEFCAR RHEELIPRRL LIPQVTQLGA AAQKYQAATQ
501: NASSSASVSE LQNNCNMFVA SARQLAKALE VPLVNDLGYT KRYVRCLQIS EVVNSMKDLI DYSRETGTGP MESLAKFPRR NGTSAGVQGP VQSIEDQTQQ
601: PQQQQQQQQH THQIVSSSNH ETTSQPGVPP LPLSNGMSNV HNSVNRVPAT SSSGTVVGLL HQNSMNSRQQ NPMNGGSGTY SGNTVQMPSP NSSSTMPQSQ
701: PNSSQFQSPT PSSSNNTPQA SHSGLSSVQH MNSANSPKIS MQQPAHSNDV DANDSQSSVQ KIIHEMMMSS QLGGSGMVGN GIIGNDMKNG HGMLATSNNS
801: LLNGSNCLVR NGTANANSTG VGAGFGSMNN GLGQAAMVNG MRAALGNNPS VMNGLGGITM ARERNMSQQQ QDLGNQLLSG LEAVNGFNNL QFDWKTSP

Best Arabidopsis Sequence Match ( AT1G43850.1 )
(BLAST)

001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA

Arabidopsis Description

SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.