CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07467
KRH45412
KRH70974

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43850.1	KRH07467	AT1G69120.1	16854969
AT1G43850.1	KRH45412	AT1G69120.1	16854969
AT1G43850.1	KRH70974	AT1G69120.1	16854969

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64564	Soybean	nucleus, plastid	82.19	82.55
KRH18102	Soybean	plastid	81.75	80.6
KRH53367	Soybean	nucleus	81.31	77.42
VIT_18s0001g15320.t01	Wine grape	nucleus, plastid	75.52	75.68
Solyc06g059760.2.1	Tomato	nucleus, plastid	66.01	67.26
CDY67669	Canola	mitochondrion, nucleus	17.16	65.97
Solyc06g059750.2.1	Tomato	nucleus, plastid	56.28	61.46
CDY40943	Canola	nucleus, plastid	47.54	56.2
Bra032192.1-P	Field mustard	nucleus, plastid	46.67	55.17
GSMUA_Achr10P...	Banana	nucleus, plastid	52.46	54.61
Bra036931.1-P	Field mustard	nucleus, plastid	43.61	53.77
GSMUA_Achr2P20700_001	Banana	plastid	49.84	53.21
CDY14963	Canola	nucleus, plastid	42.73	52.98
GSMUA_Achr6P18610_001	Banana	plastid	50.71	52.97
AT1G43850.1	Thale cress	nucleus, plastid	50.49	52.68
GSMUA_Achr3P02850_001	Banana	nucleus	49.51	50.56
Os11t0207000-01	Rice	nucleus, plastid	49.95	50.0
TraesCS4A01G211800.1	Wheat	nucleus, plastid	49.51	49.78
TraesCS4D01G101500.1	Wheat	nucleus, plastid	49.4	49.78
TraesCS4B01G104300.1	Wheat	nucleus, plastid	49.07	49.23
Os11t0207100-01	Rice	nucleus	50.05	49.09
HORVU4Hr1G017160.3	Barley	nucleus, plastid	49.29	48.92
TraesCS4B01G104400.2	Wheat	nucleus, plastid	49.84	48.82
TraesCS4A01G211700.2	Wheat	nucleus, plastid	49.62	48.66
Zm00001d007295_P003	Maize	nucleus, plastid	48.63	48.63
HORVU4Hr1G017140.2	Barley	plastid	49.84	48.61
TraesCS4D01G101700.1	Wheat	nucleus, plastid	49.62	48.5
KXG28056	Sorghum	nucleus, plastid	49.51	48.29
Zm00001d023706_P002	Maize	nucleus	47.87	48.29
KXG23150	Sorghum	nucleus	48.63	48.0
Zm00001d049125_P002	Maize	nucleus, plastid	48.52	47.74
Zm00001d041803_P001	Maize	nucleus	47.1	47.05
CDY70167	Canola	cytosol, mitochondrion, nucleus	13.44	43.31
KRG88471	Soybean	nucleus, plastid	17.49	37.38
GSMUA_Achr5P25900_001	Banana	nucleus	37.92	36.15
KRH38603	Soybean	plastid	18.36	31.64
KRH38604	Soybean	nucleus	27.54	31.19
KRH09131	Soybean	nucleus, plastid	28.42	29.92
KRH09132	Soybean	plastid	28.63	29.81
PGSC0003DMT400092079	Potato	nucleus	19.13	23.68
CDY69476	Canola	nucleus	6.89	23.08

Protein Annotations

EMBL:ACUP02008730	EnsemblPlants:KRH15928	EnsemblPlantsGene:GLYMA_14G119800	EntrezGene:100798031	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378
PANTHER:PTHR10378:SF17	PFAM:PF01803	ProteinID:KRH15928	ProteinID:KRH15928.1	ProteinID:KRH15929.1	SEG:seg
UniParc:UPI000233AB58	UniProt:I1MAE2	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:16751592..16763348

Molecular Weight (calculated)

99507.0 Da

IEP (calculated)

8.869

GRAVY (calculated)

-0.683

Length

915 amino acids

Sequence
(BLAST)

001: MVPPGPPTPI GGAQPVPPSL LRSNSGMLGG QGGPVPSQTS FPSLVAQRNQ FNNMNMLGNM SNVTSLLNQS FPNGIPNSGH GGPGNSQRSG GIDARAEADP
101: LSGVGSGMNF GNQLQSNLMN PGSSGQGQGQ QFSNASGSQM LPDQQHSQQL EPQNFQQHSQ PSMQQFSAPL NAQQQQQQHF QSIRGGMGGV GQVKLESQVN
201: NDQFGHQQQL PSRNLAQVKL EPQQLQTLRN MAPVKLEPQH NDQQFLHQQQ QQQQQHQQQQ QQQLLHMSRQ SSQAAAAQMN HLLQQQRLLQ YQQHQQQQQQ
301: LLKTMPQQRS PLSQQFQQQN MPMRSPVKPA YEPGMCARRL THYMYQQQHR PEDNNIEFWR KFVAEYFAPN AKKKWCVSMY GSGRQTTGVF PQDVWHCEIC
401: NCKPGRGFEA TAEVLPRLFK IKYESGTLEE LLYVDMPREY HNSSGQIVLD YAKAIQESVF EQLRVVRDGQ LRIVFSPDLK ICSWEFCARR HEELIPRRLL
501: IPQVSQLGVV AQKYQAFTQN ATPNLSVPEL QNNCNLFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPM DSLAKFPRRT
601: SGSSGLHSQA QQSEDQLQQQ SQPPQHMVPH TSNGDQNSVQ TAAMQIASSN GVTSVNNSVN AASASASNTT STIVGLLHQN SMNSRQNSMN NASSPYGGSS
701: VQIPSPGSSG NVPQAQPNQS PFQSPTPSSS NNPQTSHPAI TSANHMGTAN SPANITLQQQ QTSLPAEADP SDAQSSVQKI IHEMMISSQM NGPGGMAGTG
801: LLGNDMKNVN GILPGSNSTG LNSGSGLAGN GAVNSSNSGV GVGGYGTMGL GPSGMTNGMR PVMGHNSIMN GRGGMASLAR DQVMNHQQDL SSQLLSGLGG
901: VNGFSNLQFD WKPSP

Best Arabidopsis Sequence Match ( AT1G43850.1 )
(BLAST)

001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA

Arabidopsis Description

SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.