Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G063800.7 | |
| HORVU5Hr1G095630.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G43850.1 | HORVU2Hr1G063800.7 | AT1G69120.1 | 16854969 |
| AT1G43850.1 | HORVU5Hr1G095630.3 | AT1G69120.1 | 16854969 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G101500.1 | Wheat | nucleus, plastid | 93.71 | 95.15 |
| TraesCS4A01G211800.1 | Wheat | nucleus, plastid | 93.82 | 95.05 |
| TraesCS4B01G104300.1 | Wheat | nucleus, plastid | 93.17 | 94.19 |
| HORVU4Hr1G017140.2 | Barley | plastid | 84.6 | 83.16 |
| Os11t0207000-01 | Rice | nucleus, plastid | 80.26 | 80.96 |
| Os11t0207100-01 | Rice | nucleus | 81.67 | 80.71 |
| KXG28056 | Sorghum | nucleus, plastid | 78.2 | 76.87 |
| Zm00001d049125_P002 | Maize | nucleus, plastid | 77.22 | 76.56 |
| Zm00001d007295_P003 | Maize | nucleus, plastid | 75.6 | 76.17 |
| CDY67669 | Canola | mitochondrion, nucleus | 15.08 | 58.4 |
| GSMUA_Achr6P18610_001 | Banana | plastid | 49.57 | 52.17 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 50.54 | 51.04 |
| KRH64564 | Soybean | nucleus, plastid | 50.0 | 50.6 |
| KRH15928 | Soybean | nucleus, plastid | 48.92 | 49.29 |
| Solyc06g059760.2.1 | Tomato | nucleus, plastid | 47.51 | 48.78 |
| KRH18102 | Soybean | plastid | 48.81 | 48.49 |
| Solyc06g059750.2.1 | Tomato | nucleus, plastid | 44.03 | 48.45 |
| KRH53367 | Soybean | nucleus | 50.22 | 48.18 |
| CDY14963 | Canola | nucleus, plastid | 38.18 | 47.7 |
| Bra036931.1-P | Field mustard | nucleus, plastid | 36.66 | 45.55 |
| Bra032192.1-P | Field mustard | nucleus, plastid | 37.85 | 45.09 |
| CDY40943 | Canola | nucleus, plastid | 37.74 | 44.96 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 41.76 | 43.9 |
| VIT_04s0044g01260.t01 | Wine grape | plastid | 40.67 | 43.0 |
| GSMUA_Achr5P25900_001 | Banana | nucleus | 38.18 | 36.67 |
| CDY70167 | Canola | cytosol, mitochondrion, nucleus | 11.28 | 36.62 |
| CDY69476 | Canola | nucleus | 7.81 | 26.37 |
| HORVU7Hr1G115870.4 | Barley | plastid | 20.72 | 23.73 |
| HORVU7Hr1G010050.2 | Barley | nucleus, plastid | 20.93 | 22.06 |
| HORVU7Hr1G029650.10 | Barley | plastid | 20.82 | 21.97 |
| PGSC0003DMT400092079 | Potato | nucleus | 17.35 | 21.65 |
Protein Annotations
| EMBL:AK364385 | EnsemblPlants:HORVU4Hr1G017160.3 | EnsemblPlantsGene:HORVU4Hr1G017160 | InterPro:LIM-bd/SEUSS | ncoils:Coil | PANTHER:PTHR10378 |
| PANTHER:PTHR10378:SF17 | PFAM:PF01803 | SEG:seg | UniParc:UPI00020065EF | UniProt:F2DKG7 | MapMan:35.1 |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DKG7]
Coordinates
chrchr4H:-:74259562..74271270
Molecular Weight (calculated)
100497.0 Da
IEP (calculated)
8.755
GRAVY (calculated)
-0.740
Length
922 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSGPPNPM GPGQPVGAAS LLRTNSSLLS GGQQGMGGGG MLQSQSPFSS LVSPRTQFGG NGLLGGSSNV SPLLNRQSFG NGGTVPGPGQ MANGGLPMST
101: LQQRGGLDGT GDLVGTGGSD PVSSSQVSLG NHVGSDNLQQ QQQKMDMQDL QQQQQQHHHH QQQLSMSYNQ QQLPTQPLQL HGTVKLENGG SIGGVKLEQQ
201: MGQLDQNGPA QMMRNAGNVK FEPHQLQSLR GLGAVKMEQP NSDSSAFLQQ QQQQHHLLQL TKQNPQAAAA AQLNLLQQQR IMHMQQQQQQ HILKNLPLQR
301: SQLQQQQQQQ QHQHQQQQQH QHQQQQQHQH QQQQLLRQQS LNIRTPGKPA SYEPGTCAKR LTHYMYHQQN RPQDNNIEYW RNFVNEYFAP TAKKRWCVSL
401: YGTGRQTTGV FPQDVWHCEI CNRKPGRGFE TTVEVLPRLC QIKYASGTLE ELLYIDMPRE SKNASGQIVL DYTKAIQESV FDQLRVVREG HLRIIFNPDL
501: KIASWEFCAR RHEELIPRRS IIPQVSHLGA VVQKYQAAVQ NPTSLTTQDM QNNCTSFVGC ARQLAKALEV PLVNDLGYTK RYVRCLQIAE VVNCMKDLID
601: HSKQTGSGPI DSLHKFPRRT PPGINPLQPQ QQQPEEQQPV PQSSNQSGQN SAPMAGAQAS ASANADVTSN NSLNCAPSTS APSPTVMGIL QGSMDSSQDH
701: LMSSANGQYN SGNNGAIPKV NSASSLQSNP SASFASQVPI SSNNNTMPSL QNTNQLSSPA VSSNLPPMQP PATRPQEPDQ SDTQSSVERI LQEMMSSQMN
801: GVGHAGNDMK RPNGFTPGIN GVNCLVGNAV TNHSGIGGMG LGAVGGFGSN PTANGLRMAM PNNAMAMNGR MGMHHSAHDL SQLGQQQQQQ QQQQHDIGNQ
901: LLGGLRAGNS FNNLQYDWKP SQ
101: LQQRGGLDGT GDLVGTGGSD PVSSSQVSLG NHVGSDNLQQ QQQKMDMQDL QQQQQQHHHH QQQLSMSYNQ QQLPTQPLQL HGTVKLENGG SIGGVKLEQQ
201: MGQLDQNGPA QMMRNAGNVK FEPHQLQSLR GLGAVKMEQP NSDSSAFLQQ QQQQHHLLQL TKQNPQAAAA AQLNLLQQQR IMHMQQQQQQ HILKNLPLQR
301: SQLQQQQQQQ QHQHQQQQQH QHQQQQQHQH QQQQLLRQQS LNIRTPGKPA SYEPGTCAKR LTHYMYHQQN RPQDNNIEYW RNFVNEYFAP TAKKRWCVSL
401: YGTGRQTTGV FPQDVWHCEI CNRKPGRGFE TTVEVLPRLC QIKYASGTLE ELLYIDMPRE SKNASGQIVL DYTKAIQESV FDQLRVVREG HLRIIFNPDL
501: KIASWEFCAR RHEELIPRRS IIPQVSHLGA VVQKYQAAVQ NPTSLTTQDM QNNCTSFVGC ARQLAKALEV PLVNDLGYTK RYVRCLQIAE VVNCMKDLID
601: HSKQTGSGPI DSLHKFPRRT PPGINPLQPQ QQQPEEQQPV PQSSNQSGQN SAPMAGAQAS ASANADVTSN NSLNCAPSTS APSPTVMGIL QGSMDSSQDH
701: LMSSANGQYN SGNNGAIPKV NSASSLQSNP SASFASQVPI SSNNNTMPSL QNTNQLSSPA VSSNLPPMQP PATRPQEPDQ SDTQSSVERI LQEMMSSQMN
801: GVGHAGNDMK RPNGFTPGIN GVNCLVGNAV TNHSGIGGMG LGAVGGFGSN PTANGLRMAM PNNAMAMNGR MGMHHSAHDL SQLGQQQQQQ QQQQHDIGNQ
901: LLGGLRAGNS FNNLQYDWKP SQ
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.