CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX95960
CDY04265
CDY07357
CDY33554
CDY65811

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43850.1	CDX95960	AT1G69120.1	16854969
AT1G43850.1	CDY04265	AT1G69120.1	16854969
AT1G43850.1	CDY07357	AT1G69120.1	16854969
AT1G43850.1	CDY33554	AT1G69120.1	16854969
AT1G43850.1	CDY65811	AT1G69120.1	16854969

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67669	Canola	mitochondrion, nucleus	26.42	81.93
CDY70167	Canola	cytosol, mitochondrion, nucleus	29.54	76.76
CDY40943	Canola	nucleus, plastid	66.12	63.05
CDY69476	Canola	nucleus	22.76	61.54
AT1G43850.1	Thale cress	nucleus, plastid	68.16	57.35
Solyc06g059750.2.1	Tomato	nucleus, plastid	51.08	44.99
VIT_18s0001g15320.t01	Wine grape	nucleus, plastid	54.06	43.7
KRH64564	Soybean	nucleus, plastid	53.52	43.36
KRH15928	Soybean	nucleus, plastid	52.98	42.73
Solyc06g059760.2.1	Tomato	nucleus, plastid	51.63	42.43
KRH18102	Soybean	plastid	52.85	42.03
GSMUA_Achr10P...	Banana	nucleus, plastid	49.19	41.3
KRH53367	Soybean	nucleus	53.66	41.21
GSMUA_Achr2P20700_001	Banana	plastid	47.83	41.19
GSMUA_Achr6P18610_001	Banana	plastid	47.7	40.18
Os11t0207000-01	Rice	nucleus, plastid	48.92	39.5
TraesCS4D01G101500.1	Wheat	nucleus, plastid	48.37	39.32
TraesCS4A01G211800.1	Wheat	nucleus, plastid	48.24	39.12
TraesCS4B01G104300.1	Wheat	nucleus, plastid	48.24	39.04
Os11t0207100-01	Rice	nucleus	48.92	38.69
Zm00001d007295_P003	Maize	nucleus, plastid	47.56	38.36
HORVU4Hr1G017160.3	Barley	nucleus, plastid	47.7	38.18
HORVU4Hr1G017140.2	Barley	plastid	48.51	38.17
Zm00001d041803_P001	Maize	nucleus	47.29	38.1
KXG28056	Sorghum	nucleus, plastid	48.37	38.06
Zm00001d023706_P002	Maize	nucleus	46.75	38.04
GSMUA_Achr3P02850_001	Banana	nucleus	46.07	37.95
TraesCS4B01G104400.2	Wheat	nucleus, plastid	47.97	37.9
Zm00001d049125_P002	Maize	nucleus, plastid	47.7	37.85
TraesCS4A01G211700.2	Wheat	nucleus, plastid	47.83	37.83
TraesCS4D01G101700.1	Wheat	nucleus, plastid	47.83	37.71
KXG23150	Sorghum	nucleus	47.29	37.65
CDY57709	Canola	nucleus, plastid	22.09	33.13
CDY50201	Canola	nucleus, plastid	26.42	28.59
CDX92714	Canola	cytosol	20.6	28.57
GSMUA_Achr5P25900_001	Banana	nucleus	36.72	28.23
CDX92713	Canola	nucleus, plastid	26.15	28.09
CDY52362	Canola	nucleus	25.88	27.76
CDY30691	Canola	nucleus	28.18	27.44
CDY54085	Canola	nucleus, plastid	26.02	27.23
CDX89417	Canola	nucleus	13.14	25.19
PGSC0003DMT400092079	Potato	nucleus	21.82	21.79

Protein Annotations

EnsemblPlants:CDY14963	EnsemblPlantsGene:GSBRNA2T00084948001	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF16	PFAM:PF01803
ProteinID:CDY14963	ProteinID:CDY14963.1	SEG:seg	UniParc:UPI0004EB9FF3	UniProt:A0A078FRM1	MapMan:35.1

Description

BnaA10g08930DBnaA10g08930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRM1]

Coordinates

chrLK032049:+:272885..276767

Molecular Weight (calculated)

81680.0 Da

IEP (calculated)

9.442

GRAVY (calculated)

-0.749

Length

738 amino acids

Sequence
(BLAST)

001: MVPSEAPNPV GSGDNNVQPP FPSPLTQFSN NMSMPNTSSL LNNNHSFASD IGFSGLSSSG QHFSNVSANQ QQRSSTTKME QQQQQRGGGL AGVKLEPGGG
101: QVTNDQKMLT SLGSVKLEPQ QLQAMRNLAQ VKMEPQHSEQ SLFLQQQQRQ FLQMPGQSPQ TQMNNILHQQ RLMQLQHQHQ HQQQLLLLKS MPQQRPQLPQ
201: QQRPPMKPVY EPGMGAQRLT QYMYRQQHRP QDNNIEFWRK FVSEYFAPNA KKRWCVSMYG SGRQTTGVFP QDVWHCEICN RKPGRGFEAT AEVLPRLFKI
301: KYESGTLEEL LYVDMPRESQ NSSGQIVLEY AKATQESVFE QLRVVRDGQL RIVFSPDLKI FSWEFCARRH EELIPRRLLI PQVSQLGSAA QKYQQAAQNA
401: TTDSALPELQ NNCNMFVASA RQLAKALEVP LVNDLGYTKR YVRCLQISEV VNSMKDLIDY SRETRTGPIE SLAKFPRRTG PSSALPGPSA QQPNEQPRQQ
501: QHQSVAQIAN KDQSCGQSSL NYAFNAASAS TSTGSIHQNS MKQRNQNAAY KTPSSPYGGI SIQMQSPSNS GTMAPSSQQQ HNLPSFQSPT SSSNNNYPSQ
601: NGITSINNHM GSTNLPAIQQ AAADEANESS SVQKILNEIL MNNNQTHNTS GGGGHESFGN DGKGGRNVSS SGVLMMNNGQ VNTSIGGFGM TNINGNNGLM
701: NGRAGMMVRD PNVQQDVGNQ RLGGAVNAFN NFQCDWNV

Best Arabidopsis Sequence Match ( AT1G43850.1 )
(BLAST)

001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA

Arabidopsis Description

SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.