Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G063800.7 | |
| HORVU5Hr1G095630.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G43850.1 | HORVU2Hr1G063800.7 | AT1G69120.1 | 16854969 |
| AT1G43850.1 | HORVU5Hr1G095630.3 | AT1G69120.1 | 16854969 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G101700.1 | Wheat | nucleus, plastid | 94.78 | 94.98 |
| TraesCS4B01G104400.2 | Wheat | nucleus, plastid | 94.56 | 94.97 |
| TraesCS4A01G211700.2 | Wheat | nucleus, plastid | 94.35 | 94.86 |
| HORVU4Hr1G017160.3 | Barley | nucleus, plastid | 83.16 | 84.6 |
| Os11t0207100-01 | Rice | nucleus | 82.09 | 82.53 |
| Os11t0207000-01 | Rice | nucleus, plastid | 80.38 | 82.49 |
| Zm00001d049125_P002 | Maize | nucleus, plastid | 78.78 | 79.46 |
| KXG28056 | Sorghum | nucleus, plastid | 79.21 | 79.21 |
| Zm00001d007295_P003 | Maize | nucleus, plastid | 76.55 | 78.47 |
| CDY67669 | Canola | mitochondrion, nucleus | 14.39 | 56.72 |
| GSMUA_Achr6P18610_001 | Banana | plastid | 50.11 | 53.65 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 50.43 | 51.81 |
| KRH64564 | Soybean | nucleus, plastid | 49.68 | 51.15 |
| KRH15928 | Soybean | nucleus, plastid | 48.61 | 49.84 |
| Solyc06g059750.2.1 | Tomato | nucleus, plastid | 44.24 | 49.52 |
| Solyc06g059760.2.1 | Tomato | nucleus, plastid | 47.33 | 49.44 |
| KRH53367 | Soybean | nucleus | 49.89 | 48.7 |
| CDY14963 | Canola | nucleus, plastid | 38.17 | 48.51 |
| KRH18102 | Soybean | plastid | 47.87 | 48.38 |
| Bra032192.1-P | Field mustard | nucleus, plastid | 38.81 | 47.03 |
| CDY40943 | Canola | nucleus, plastid | 38.49 | 46.64 |
| Bra036931.1-P | Field mustard | nucleus, plastid | 36.25 | 45.82 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 41.36 | 44.24 |
| VIT_04s0044g01260.t01 | Wine grape | plastid | 40.41 | 43.46 |
| CDY70167 | Canola | cytosol, mitochondrion, nucleus | 11.3 | 37.32 |
| GSMUA_Achr5P25900_001 | Banana | nucleus | 37.85 | 36.98 |
| CDY69476 | Canola | nucleus | 7.36 | 25.27 |
| HORVU7Hr1G115870.4 | Barley | plastid | 20.36 | 23.73 |
| PGSC0003DMT400092079 | Potato | nucleus | 17.7 | 22.46 |
| HORVU7Hr1G010050.2 | Barley | nucleus, plastid | 20.79 | 22.29 |
| HORVU7Hr1G029650.10 | Barley | plastid | 20.47 | 21.97 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G017140.2 | EnsemblPlantsGene:HORVU4Hr1G017140 | InterPro:LIM-bd/SEUSS | ncoils:Coil | PANTHER:PTHR10378 | PANTHER:PTHR10378:SF17 |
| PFAM:PF01803 | SEG:seg | UniParc:UPI000B4846D4 | UniProt:A0A287NE37 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr4H:+:73661316..73672320
Molecular Weight (calculated)
102103.0 Da
IEP (calculated)
8.535
GRAVY (calculated)
-0.741
Length
938 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSGPPNPM GPGQPVGGAS LLRTSSSLLS GGQQGMGGGG GMLQSQSPFS SLVSPRTQFG GNGLLGATSN VSSLLNRSSF GNGSPVPSPG QMPNGGLPMN
101: TLQQRGGLDG AGDFIGTGGS DPMSFPSSSQ VSLGNHLGSD ILQQQQQQMD AQDLQHQQEQ QHQLPMSYNQ QQLSSQQPQS QAKVKLENGG SIGGVKLEQQ
201: IGLPDQNGPA QMMRNAGNVK FEPQQLQALR GLGGVKMEQS SSDPSAFLQQ QQQQQQHHNH LLQLTKQNPQ AAAAAQLNLL QQQRLLHMQQ HQQQHQQILK
301: NMPLQRNQLQ QQQQQQQQQQ QQQQQXQQQQ QHQQQLLRQQ SLNMRTPGKL APYEPGTCAK RLTHYMYHQQ NRPQDNNIEY WRNFVNEYFA PTAKKRWCVS
401: LYGSGRQTTG VFPQDVWHCE ICNRKPGRGF ETTVEVLPRL CQIKYASGTL EELLYIDMPR ESQNASGQII LDYAKAIQES VFDQLRVVRE GHLRIVFNPD
501: LKIASWEFCA RRHEELIPRR SIIPQVSQLG TAVQKYQAAA QSSTSLTTQD MQNNCNSFVL CARQLAKALE VPLVNDLGYT KRYVRCLQIA EVVNCMKDLI
601: DYSRQTGSGP IDSLHNFPRR TPSGINPNQQ HQQQPEEQQS VPQSSNQSGQ NSAPMAGVQA SASANADVTS NNSLTCAPST SAPSPSVVGL LQGSVNSSRQ
701: DHSMSNVNGL YNNGDDGVIP KVNSTNSLQS NPSPSFSSQV PTSSNNNMMP APQNTNQLSS PAVSSSNLTP MQPPATRAQE PEPSDSQSSV QRILQEMMSS
801: QMNGVGHGAN DMKRPNGLAP GINGVNCLVG NAVSNHSGVG GMGFGAMGGF GSNSAASLRM AMANNAMTMN GNAMAMNGRM GMHHSAHDLS QLGQQQQQQQ
901: HQQHQQHQQQ HDIGNQLLGG LRAANSFNNI QYDWKPSQ
101: TLQQRGGLDG AGDFIGTGGS DPMSFPSSSQ VSLGNHLGSD ILQQQQQQMD AQDLQHQQEQ QHQLPMSYNQ QQLSSQQPQS QAKVKLENGG SIGGVKLEQQ
201: IGLPDQNGPA QMMRNAGNVK FEPQQLQALR GLGGVKMEQS SSDPSAFLQQ QQQQQQHHNH LLQLTKQNPQ AAAAAQLNLL QQQRLLHMQQ HQQQHQQILK
301: NMPLQRNQLQ QQQQQQQQQQ QQQQQXQQQQ QHQQQLLRQQ SLNMRTPGKL APYEPGTCAK RLTHYMYHQQ NRPQDNNIEY WRNFVNEYFA PTAKKRWCVS
401: LYGSGRQTTG VFPQDVWHCE ICNRKPGRGF ETTVEVLPRL CQIKYASGTL EELLYIDMPR ESQNASGQII LDYAKAIQES VFDQLRVVRE GHLRIVFNPD
501: LKIASWEFCA RRHEELIPRR SIIPQVSQLG TAVQKYQAAA QSSTSLTTQD MQNNCNSFVL CARQLAKALE VPLVNDLGYT KRYVRCLQIA EVVNCMKDLI
601: DYSRQTGSGP IDSLHNFPRR TPSGINPNQQ HQQQPEEQQS VPQSSNQSGQ NSAPMAGVQA SASANADVTS NNSLTCAPST SAPSPSVVGL LQGSVNSSRQ
701: DHSMSNVNGL YNNGDDGVIP KVNSTNSLQS NPSPSFSSQV PTSSNNNMMP APQNTNQLSS PAVSSSNLTP MQPPATRAQE PEPSDSQSSV QRILQEMMSS
801: QMNGVGHGAN DMKRPNGLAP GINGVNCLVG NAVSNHSGVG GMGFGAMGGF GSNSAASLRM AMANNAMTMN GNAMAMNGRM GMHHSAHDLS QLGQQQQQQQ
901: HQQHQQHQQQ HDIGNQLLGG LRAANSFNNI QYDWKPSQ
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.