Factsheet for AT1G43850.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67669	Canola	mitochondrion, nucleus	21.32	78.57
Bra032192.1-P	Field mustard	nucleus, plastid	63.74	72.22
CDY40943	Canola	nucleus, plastid	60.66	68.73
CDY14963	Canola	nucleus, plastid	57.35	68.16
Bra036931.1-P	Field mustard	nucleus, plastid	56.33	66.58
CDY70167	Canola	cytosol, mitochondrion, nucleus	18.59	57.39
Solyc06g059750.2.1	Tomato	nucleus, plastid	49.26	51.55
VIT_18s0001g15320.t01	Wine grape	nucleus, plastid	53.36	51.26
KRH64564	Soybean	nucleus, plastid	53.02	51.04
KRH15928	Soybean	nucleus, plastid	52.68	50.49
KRH18102	Soybean	plastid	52.11	49.25
Solyc06g059760.2.1	Tomato	nucleus, plastid	50.4	49.22
KRH53367	Soybean	nucleus	52.79	48.18
GSMUA_Achr10P...	Banana	nucleus, plastid	46.52	46.42
GSMUA_Achr2P20700_001	Banana	plastid	44.7	45.74
Os11t0207000-01	Rice	nucleus, plastid	45.04	43.22
GSMUA_Achr6P18610_001	Banana	plastid	42.65	42.69
GSMUA_Achr3P02850_001	Banana	nucleus	43.56	42.63
Os11t0207100-01	Rice	nucleus	45.27	42.55
TraesCS4A01G211800.1	Wheat	nucleus, plastid	43.56	41.98
Zm00001d007295_P003	Maize	nucleus, plastid	43.79	41.97
TraesCS4D01G101500.1	Wheat	nucleus, plastid	43.44	41.96
HORVU4Hr1G017160.3	Barley	nucleus, plastid	43.9	41.76
KXG23150	Sorghum	nucleus	44.01	41.64
TraesCS4B01G104300.1	Wheat	nucleus, plastid	43.22	41.56
HORVU4Hr1G017140.2	Barley	plastid	44.24	41.36
KXG28056	Sorghum	nucleus, plastid	44.13	41.26
Zm00001d041803_P001	Maize	nucleus	42.99	41.16
Zm00001d023706_P002	Maize	nucleus	42.53	41.12
Zm00001d049125_P002	Maize	nucleus, plastid	43.56	41.08
TraesCS4D01G101700.1	Wheat	nucleus, plastid	43.79	41.03
TraesCS4B01G104400.2	Wheat	nucleus, plastid	43.67	41.01
TraesCS4A01G211700.2	Wheat	nucleus, plastid	43.33	40.73
GSMUA_Achr5P25900_001	Banana	nucleus	33.52	30.62
AT4G25515.1	Thale cress	nucleus, plastid	23.83	30.51
AT4G25520.1	Thale cress	plastid	23.6	27.67
AT5G62090.1	Thale cress	nucleus	25.2	27.08
PGSC0003DMT400092079	Potato	nucleus	19.16	22.73

Protein Annotations

MapMan:35.1	EntrezGene:840981	ProteinID:AAF63115.1	ProteinID:AEE32000.1	ProteinID:AEE32001.1	EMBL:AF378782
EMBL:AK118277	ArrayExpress:AT1G43850	EnsemblPlantsGene:AT1G43850	RefSeq:AT1G43850	TAIR:AT1G43850	RefSeq:AT1G43850-TAIR-G
EnsemblPlants:AT1G43850.1	TAIR:AT1G43850.1	Unigene:At.12073	ncoils:Coil	GO:GO:0000003	GO:GO:0001666
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006950	GO:GO:0006974	GO:GO:0006979	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009617	GO:GO:0009620
GO:GO:0009624	GO:GO:0009628	GO:GO:0009719	GO:GO:0009733	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0010272	GO:GO:0030154
GO:GO:0046898	GO:GO:0046982	GO:GO:0048467	GO:GO:0048481	GO:GO:0060090	GO:GO:0071217
InterPro:LIM-bd/SEUSS	RefSeq:NP_001117434.1	RefSeq:NP_175051.1	PFAM:PF01803	PO:PO:0000013	PO:PO:0000018
PO:PO:0000019	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	PANTHER:PTHR10378	PANTHER:PTHR10378:SF16	UniProt:Q8W234	Symbol:SEU	UniParc:UPI00000A9B16
SEG:seg	:	:	:	:	:

Description

SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]

Coordinates

chr1:+:16616988..16622049

Molecular Weight (calculated)

96237.9 Da

IEP (calculated)

9.443

GRAVY (calculated)

-0.761

Length

877 amino acids

Sequence
(BLAST)

001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.