Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG28056 | Sorghum | nucleus, plastid | 93.01 | 90.72 |
| Zm00001d049125_P002 | Maize | nucleus, plastid | 92.13 | 90.65 |
| Os11t0207000-01 | Rice | nucleus, plastid | 80.66 | 80.74 |
| Os11t0207100-01 | Rice | nucleus | 80.87 | 79.31 |
| TraesCS4D01G101700.1 | Wheat | nucleus, plastid | 78.69 | 76.92 |
| TraesCS4D01G101500.1 | Wheat | nucleus, plastid | 76.28 | 76.87 |
| TraesCS4B01G104400.2 | Wheat | nucleus, plastid | 78.36 | 76.77 |
| TraesCS4A01G211800.1 | Wheat | nucleus, plastid | 76.28 | 76.7 |
| TraesCS4B01G104300.1 | Wheat | nucleus, plastid | 76.39 | 76.64 |
| TraesCS4A01G211700.2 | Wheat | nucleus, plastid | 78.14 | 76.63 |
| HORVU4Hr1G017140.2 | Barley | plastid | 78.47 | 76.55 |
| HORVU4Hr1G017160.3 | Barley | nucleus, plastid | 76.17 | 75.6 |
| Zm00001d023706_P002 | Maize | nucleus | 69.18 | 69.79 |
| Zm00001d041803_P001 | Maize | nucleus | 68.2 | 68.12 |
| CDY67669 | Canola | mitochondrion, nucleus | 14.75 | 56.72 |
| GSMUA_Achr6P18610_001 | Banana | plastid | 50.27 | 52.51 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 51.15 | 51.26 |
| KRH64564 | Soybean | nucleus, plastid | 49.29 | 49.51 |
| Solyc06g059750.2.1 | Tomato | nucleus, plastid | 45.14 | 49.28 |
| Solyc06g059760.2.1 | Tomato | nucleus, plastid | 47.87 | 48.78 |
| KRH15928 | Soybean | nucleus, plastid | 48.63 | 48.63 |
| Bra032192.1-P | Field mustard | nucleus, plastid | 40.55 | 47.93 |
| CDY14963 | Canola | nucleus, plastid | 38.36 | 47.56 |
| KRH18102 | Soybean | plastid | 48.09 | 47.41 |
| KRH53367 | Soybean | nucleus | 49.62 | 47.24 |
| CDY40943 | Canola | nucleus, plastid | 39.67 | 46.9 |
| Bra036931.1-P | Field mustard | nucleus, plastid | 36.61 | 45.15 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 41.97 | 43.79 |
| VIT_04s0044g01260.t01 | Wine grape | plastid | 40.77 | 42.78 |
| CDY70167 | Canola | cytosol, mitochondrion, nucleus | 11.69 | 37.68 |
| GSMUA_Achr5P25900_001 | Banana | nucleus | 38.47 | 36.67 |
| Zm00001d018890_P006 | Maize | nucleus, plastid | 21.42 | 26.03 |
| Zm00001d035990_P002 | Maize | plastid | 21.86 | 25.64 |
| Zm00001d045516_P006 | Maize | nucleus, plastid | 21.64 | 25.55 |
| CDY69476 | Canola | nucleus | 7.43 | 24.91 |
| PGSC0003DMT400092079 | Potato | nucleus | 18.25 | 22.6 |
Protein Annotations
| EnsemblPlants:Zm00001d007295_P003 | EnsemblPlants:Zm00001d007295_T003 | EnsemblPlantsGene:Zm00001d007295 | EntrezGene:103647984 | InterPro:LIM-bd/SEUSS | ncoils:Coil |
| PANTHER:PTHR10378 | PANTHER:PTHR10378:SF17 | PFAM:PF01803 | ProteinID:ONM26470.1 | ProteinID:ONM26471.1 | ProteinID:ONM26475.1 |
| SEG:seg | UniParc:UPI000221B0D2 | UniProt:A0A1D6F598 | MapMan:35.1 | : | : |
Description
Transcriptional corepressor SEUSS
Coordinates
chr2:-:226993299..227000388
Molecular Weight (calculated)
98954.8 Da
IEP (calculated)
8.582
GRAVY (calculated)
-0.654
Length
915 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPSGPPNPM GHGQPVGGAA PSLLRTSSSL LSGGGQPGMG GGGGGMLSSQ SPFSSLVSPR TQFGGNGLLG GASLLNRPPF GNGGPMPGPG SMQAVGMQMS
101: TLQQRAGLDG ASDFISAEGS DPLSFPSSSQ VNLGNQMGSD NLQATSQQQQ QQMDAMQDMQ QQLPMSYNQQ QLPPQHSQQL QQPQATVKLE NGGSMISIKP
201: EQQMAQPDQM MRSASGVKLE PQQLQAQMMR SLSSVKMEQQ TSDSSAFLQQ QQQQQHLLQL TKQIRNCPEL VSIGGPNAIA NPQAATAAQL TLLQQQRLLH
301: MQQQQQQQIL KNLPLQRNQL QQQQQHQQQQ QLLRQQSLNM RTPGKSSPYE PGTCAKRLTH YMYHQQNRPQ DNNIEYWRNF VNEYFAPNAK KRWCVSLYGS
401: GRQTTGVFPQ DVWHCEICNR KPGRGFETTV EVLPRLCQIK YASGTLEELL YIDMPRESQN TSGQIILDYT KAIQESVFEQ LRVVREGHLR IVFNPDLKIA
501: SWEFCARRHE ELVPRRSIIP QVSNLGAAVQ KYQAATQNST SLSAQDMQNN CNSFVACARQ LAKALEVPLV NDLGYTKRYV RCLQIAEVVN CMKDLIDHSR
601: QTGSGPIDSL HNLPRRTPSG ASTLQPQQQQ TEEKQAIPQS SNQSGQNSAP MAGVQPSASA NGDVTSNVTL SCAPSTSAPS PSVVGLLQNS MNSRQDHAMS
701: SNNGGPYSGG NVAIPKVNST SSLHSNPPTS FPSPAPTTSN NSMMPAPQNT NQLSSPTTSP SIPPMQPPAA RPQEAEPSDS QSSVQKILQD LMSSQMNGVG
801: HSGNDTKTPN GLTHGANGVN CLLGNAAANN SGIGGMGFGA MSGFGHGMRT AMANNPMAMG ARMGMNHGAH DLSQLGQLQH QQQHQQQHDI GSQLLGGFRS
901: GNSFNNMQYD WKPSQ
101: TLQQRAGLDG ASDFISAEGS DPLSFPSSSQ VNLGNQMGSD NLQATSQQQQ QQMDAMQDMQ QQLPMSYNQQ QLPPQHSQQL QQPQATVKLE NGGSMISIKP
201: EQQMAQPDQM MRSASGVKLE PQQLQAQMMR SLSSVKMEQQ TSDSSAFLQQ QQQQQHLLQL TKQIRNCPEL VSIGGPNAIA NPQAATAAQL TLLQQQRLLH
301: MQQQQQQQIL KNLPLQRNQL QQQQQHQQQQ QLLRQQSLNM RTPGKSSPYE PGTCAKRLTH YMYHQQNRPQ DNNIEYWRNF VNEYFAPNAK KRWCVSLYGS
401: GRQTTGVFPQ DVWHCEICNR KPGRGFETTV EVLPRLCQIK YASGTLEELL YIDMPRESQN TSGQIILDYT KAIQESVFEQ LRVVREGHLR IVFNPDLKIA
501: SWEFCARRHE ELVPRRSIIP QVSNLGAAVQ KYQAATQNST SLSAQDMQNN CNSFVACARQ LAKALEVPLV NDLGYTKRYV RCLQIAEVVN CMKDLIDHSR
601: QTGSGPIDSL HNLPRRTPSG ASTLQPQQQQ TEEKQAIPQS SNQSGQNSAP MAGVQPSASA NGDVTSNVTL SCAPSTSAPS PSVVGLLQNS MNSRQDHAMS
701: SNNGGPYSGG NVAIPKVNST SSLHSNPPTS FPSPAPTTSN NSMMPAPQNT NQLSSPTTSP SIPPMQPPAA RPQEAEPSDS QSSVQKILQD LMSSQMNGVG
801: HSGNDTKTPN GLTHGANGVN CLLGNAAANN SGIGGMGFGA MSGFGHGMRT AMANNPMAMG ARMGMNHGAH DLSQLGQLQH QQQHQQQHDI GSQLLGGFRS
901: GNSFNNMQYD WKPSQ
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.